| Literature DB >> 22199713 |
Abstract
The title compound, 2C(21)H(19)N(3)O(2)·H(2)O, was synthesized by a Schiff base condensation of 2,6-diformyl-pyridine with 2-amino-4-methyl-phenol in ethanol. In the crystal, two mol-ecules of 2,6-bis-[(2-hy-droxy-5-methyl-phen-yl)imino-meth-yl]pyridine dimer-ize via hydrogen bonding to a water mol-ecule, which lies on a twofold axis. There are also intra-molecular phenol-imine hydrogen bonds. The dimers are further linked via π-π (phen-yl-pyridine) [centroid-centroid distance = 3.707 (2) Å] and π-π edge-to-edge [3.392 (2) Å] inter-actions. The dihedral angles between the central ring and the two pendant rings are 11.46 (8) and 2.06 (8)° while the pendant rings make a dihedral angle of 10.14 (8)°.Entities:
Year: 2011 PMID: 22199713 PMCID: PMC3238860 DOI: 10.1107/S1600536811045399
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| 2C21H19N3O2·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 5957 reflections |
| θ = 2.3–29.8° | |
| µ = 0.09 mm−1 | |
| β = 114.077 (1)° | Block, yellow |
| 0.60 × 0.28 × 0.11 mm | |
| Bruker APEXII CCD diffractometer | 5005 independent reflections |
| Radiation source: fine-focus sealed tube | 3919 reflections with |
| graphite | |
| φ and ω scans | θmax = 29.8°, θmin = 1.8° |
| Absorption correction: multi-scan ( | |
| 19364 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 5005 reflections | (Δ/σ)max = 0.001 |
| 251 parameters | Δρmax = 0.36 e Å−3 |
| 0 restraints | Δρmin = −0.23 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.33231 (5) | 0.57957 (7) | 0.14787 (9) | 0.0363 (2) | |
| H1A | 0.3535 (9) | 0.5552 (15) | 0.1120 (17) | 0.054* | |
| C1 | 0.32840 (6) | 0.50007 (9) | 0.21682 (10) | 0.0263 (2) | |
| C2 | 0.29313 (6) | 0.51152 (9) | 0.28174 (11) | 0.0295 (3) | |
| H2 | 0.2724 | 0.5747 | 0.2792 | 0.035* | |
| C3 | 0.28826 (5) | 0.43063 (9) | 0.35006 (11) | 0.0285 (2) | |
| H3 | 0.2641 | 0.4391 | 0.3944 | 0.034* | |
| C4 | 0.31806 (5) | 0.33642 (9) | 0.35549 (10) | 0.0259 (2) | |
| C5 | 0.30934 (6) | 0.24734 (10) | 0.42542 (12) | 0.0344 (3) | |
| H5A | 0.3220 | 0.1832 | 0.4000 | 0.052* | |
| H5B | 0.2660 | 0.2426 | 0.4119 | 0.052* | |
| H5C | 0.3344 | 0.2584 | 0.5098 | 0.052* | |
| C6 | 0.35360 (5) | 0.32612 (9) | 0.29095 (10) | 0.0243 (2) | |
| H6 | 0.3744 | 0.2630 | 0.2942 | 0.029* | |
| C7 | 0.35935 (5) | 0.40707 (9) | 0.22099 (9) | 0.0232 (2) | |
| N1 | 0.39157 (5) | 0.40486 (7) | 0.14721 (8) | 0.0250 (2) | |
| C8 | 0.42258 (5) | 0.32597 (9) | 0.14243 (9) | 0.0231 (2) | |
| H8 | 0.4261 | 0.2691 | 0.1931 | 0.028* | |
| C9 | 0.45300 (5) | 0.32110 (8) | 0.06030 (9) | 0.0209 (2) | |
| C10 | 0.44553 (5) | 0.39831 (9) | −0.02331 (10) | 0.0250 (2) | |
| H10 | 0.4218 | 0.4580 | −0.0268 | 0.030* | |
| C11 | 0.47345 (6) | 0.38588 (9) | −0.10081 (10) | 0.0274 (2) | |
| H11 | 0.4695 | 0.4372 | −0.1582 | 0.033* | |
| C12 | 0.50726 (5) | 0.29722 (9) | −0.09334 (10) | 0.0251 (2) | |
| H12 | 0.5265 | 0.2866 | −0.1461 | 0.030* | |
| C13 | 0.51268 (5) | 0.22380 (8) | −0.00723 (9) | 0.0205 (2) | |
| N2 | 0.48638 (4) | 0.23536 (7) | 0.06979 (8) | 0.02020 (19) | |
| C14 | 0.54842 (5) | 0.12966 (8) | −0.00076 (9) | 0.0219 (2) | |
| H14 | 0.5582 | 0.1125 | −0.0657 | 0.026* | |
| N3 | 0.56667 (4) | 0.07051 (7) | 0.08909 (8) | 0.02191 (19) | |
| C15 | 0.60324 (5) | −0.01660 (8) | 0.09325 (9) | 0.0199 (2) | |
| C16 | 0.63466 (5) | −0.03133 (8) | 0.02040 (9) | 0.0210 (2) | |
| H16 | 0.6319 | 0.0200 | −0.0362 | 0.025* | |
| C17 | 0.66968 (5) | −0.11873 (8) | 0.02855 (9) | 0.0218 (2) | |
| C18 | 0.70282 (5) | −0.13137 (9) | −0.05144 (10) | 0.0276 (2) | |
| H18A | 0.6833 | −0.0877 | −0.1215 | 0.041* | |
| H18B | 0.7008 | −0.2036 | −0.0758 | 0.041* | |
| H18C | 0.7459 | −0.1109 | −0.0090 | 0.041* | |
| C19 | 0.67339 (5) | −0.19289 (8) | 0.11334 (10) | 0.0242 (2) | |
| H19 | 0.6969 | −0.2536 | 0.1200 | 0.029* | |
| C20 | 0.64359 (5) | −0.17978 (9) | 0.18780 (10) | 0.0240 (2) | |
| H20 | 0.6471 | −0.2309 | 0.2452 | 0.029* | |
| C21 | 0.60848 (5) | −0.09168 (8) | 0.17862 (9) | 0.0212 (2) | |
| O2 | 0.57884 (4) | −0.08313 (7) | 0.25167 (7) | 0.02766 (19) | |
| H2A | 0.5591 (7) | −0.0281 (13) | 0.2415 (13) | 0.033* | |
| O3 | 0.5000 | 0.07316 (9) | 0.2500 | 0.0278 (3) | |
| H3D | 0.4959 (8) | 0.1100 (13) | 0.1942 (14) | 0.042* |
| O1 | 0.0520 (6) | 0.0268 (4) | 0.0359 (5) | 0.0110 (4) | 0.0239 (4) | 0.0038 (4) |
| C1 | 0.0301 (6) | 0.0243 (5) | 0.0224 (5) | 0.0038 (4) | 0.0088 (4) | −0.0028 (4) |
| C2 | 0.0304 (6) | 0.0275 (6) | 0.0300 (6) | 0.0074 (5) | 0.0119 (5) | −0.0056 (5) |
| C3 | 0.0263 (5) | 0.0334 (6) | 0.0272 (6) | 0.0027 (5) | 0.0122 (5) | −0.0071 (5) |
| C4 | 0.0242 (5) | 0.0290 (6) | 0.0251 (5) | 0.0010 (4) | 0.0106 (4) | −0.0033 (4) |
| C5 | 0.0364 (7) | 0.0364 (7) | 0.0386 (7) | 0.0026 (5) | 0.0236 (6) | 0.0021 (5) |
| C6 | 0.0242 (5) | 0.0247 (5) | 0.0241 (5) | 0.0043 (4) | 0.0099 (4) | −0.0023 (4) |
| C7 | 0.0237 (5) | 0.0249 (5) | 0.0205 (5) | 0.0026 (4) | 0.0084 (4) | −0.0036 (4) |
| N1 | 0.0278 (5) | 0.0258 (5) | 0.0226 (5) | 0.0032 (4) | 0.0115 (4) | −0.0022 (4) |
| C8 | 0.0235 (5) | 0.0252 (5) | 0.0210 (5) | 0.0021 (4) | 0.0097 (4) | −0.0007 (4) |
| C9 | 0.0203 (5) | 0.0229 (5) | 0.0193 (5) | 0.0002 (4) | 0.0077 (4) | −0.0021 (4) |
| C10 | 0.0268 (5) | 0.0223 (5) | 0.0249 (5) | 0.0021 (4) | 0.0098 (4) | 0.0009 (4) |
| C11 | 0.0315 (6) | 0.0270 (5) | 0.0241 (5) | 0.0007 (4) | 0.0117 (5) | 0.0056 (4) |
| C12 | 0.0270 (5) | 0.0302 (6) | 0.0199 (5) | 0.0012 (4) | 0.0115 (4) | 0.0021 (4) |
| C13 | 0.0207 (5) | 0.0242 (5) | 0.0168 (4) | 0.0003 (4) | 0.0079 (4) | −0.0007 (4) |
| N2 | 0.0205 (4) | 0.0226 (4) | 0.0182 (4) | 0.0003 (3) | 0.0086 (3) | −0.0012 (3) |
| C14 | 0.0232 (5) | 0.0267 (5) | 0.0185 (5) | 0.0021 (4) | 0.0110 (4) | −0.0009 (4) |
| N3 | 0.0248 (4) | 0.0221 (4) | 0.0224 (4) | 0.0006 (3) | 0.0133 (4) | −0.0004 (3) |
| C15 | 0.0224 (5) | 0.0201 (5) | 0.0182 (5) | 0.0001 (4) | 0.0093 (4) | −0.0011 (4) |
| C16 | 0.0231 (5) | 0.0215 (5) | 0.0203 (5) | 0.0003 (4) | 0.0109 (4) | 0.0008 (4) |
| C17 | 0.0217 (5) | 0.0225 (5) | 0.0223 (5) | −0.0011 (4) | 0.0102 (4) | −0.0031 (4) |
| C18 | 0.0295 (6) | 0.0278 (6) | 0.0307 (6) | 0.0032 (5) | 0.0176 (5) | −0.0011 (4) |
| C19 | 0.0235 (5) | 0.0218 (5) | 0.0268 (5) | 0.0022 (4) | 0.0097 (4) | 0.0000 (4) |
| C20 | 0.0263 (5) | 0.0232 (5) | 0.0215 (5) | −0.0003 (4) | 0.0086 (4) | 0.0034 (4) |
| C21 | 0.0230 (5) | 0.0246 (5) | 0.0171 (5) | −0.0023 (4) | 0.0093 (4) | −0.0008 (4) |
| O2 | 0.0370 (5) | 0.0287 (4) | 0.0239 (4) | 0.0042 (4) | 0.0191 (4) | 0.0038 (3) |
| O3 | 0.0386 (7) | 0.0270 (6) | 0.0266 (6) | 0.000 | 0.0223 (5) | 0.000 |
| O1—C1 | 1.3660 (15) | C11—H11 | 0.9500 |
| O1—H1A | 0.86 (2) | C12—C13 | 1.3957 (15) |
| C1—C2 | 1.3884 (16) | C12—H12 | 0.9500 |
| C1—C7 | 1.4040 (15) | C13—N2 | 1.3467 (13) |
| C2—C3 | 1.3821 (18) | C13—C14 | 1.4725 (15) |
| C2—H2 | 0.9500 | C14—N3 | 1.2731 (14) |
| C3—C4 | 1.4012 (16) | C14—H14 | 0.9500 |
| C3—H3 | 0.9500 | N3—C15 | 1.4153 (13) |
| C4—C6 | 1.3885 (15) | C15—C16 | 1.4013 (14) |
| C4—C5 | 1.5083 (17) | C15—C21 | 1.4048 (14) |
| C5—H5A | 0.9800 | C16—C17 | 1.3870 (15) |
| C5—H5B | 0.9800 | C16—H16 | 0.9500 |
| C5—H5C | 0.9800 | C17—C19 | 1.3998 (15) |
| C6—C7 | 1.4030 (16) | C17—C18 | 1.5072 (15) |
| C6—H6 | 0.9500 | C18—H18A | 0.9800 |
| C7—N1 | 1.4139 (14) | C18—H18B | 0.9800 |
| N1—C8 | 1.2778 (14) | C18—H18C | 0.9800 |
| C8—C9 | 1.4721 (15) | C19—C20 | 1.3853 (15) |
| C8—H8 | 0.9500 | C19—H19 | 0.9500 |
| C9—N2 | 1.3445 (14) | C20—C21 | 1.3934 (15) |
| C9—C10 | 1.3985 (15) | C20—H20 | 0.9500 |
| C10—C11 | 1.3827 (16) | C21—O2 | 1.3610 (13) |
| C10—H10 | 0.9500 | O2—H2A | 0.836 (17) |
| C11—C12 | 1.3857 (16) | O3—H3D | 0.812 (16) |
| C1—O1—H1A | 104.5 (13) | C12—C11—H11 | 120.6 |
| O1—C1—C2 | 119.56 (10) | C11—C12—C13 | 119.14 (10) |
| O1—C1—C7 | 120.15 (10) | C11—C12—H12 | 120.4 |
| C2—C1—C7 | 120.28 (11) | C13—C12—H12 | 120.4 |
| C3—C2—C1 | 119.70 (10) | N2—C13—C12 | 122.72 (10) |
| C3—C2—H2 | 120.2 | N2—C13—C14 | 118.71 (9) |
| C1—C2—H2 | 120.2 | C12—C13—C14 | 118.57 (9) |
| C2—C3—C4 | 121.56 (11) | C9—N2—C13 | 117.41 (9) |
| C2—C3—H3 | 119.2 | N3—C14—C13 | 122.07 (9) |
| C4—C3—H3 | 119.2 | N3—C14—H14 | 119.0 |
| C6—C4—C3 | 118.25 (11) | C13—C14—H14 | 119.0 |
| C6—C4—C5 | 121.09 (10) | C14—N3—C15 | 119.91 (9) |
| C3—C4—C5 | 120.61 (10) | C16—C15—C21 | 118.89 (9) |
| C4—C5—H5A | 109.5 | C16—C15—N3 | 124.68 (9) |
| C4—C5—H5B | 109.5 | C21—C15—N3 | 116.42 (9) |
| H5A—C5—H5B | 109.5 | C17—C16—C15 | 121.93 (10) |
| C4—C5—H5C | 109.5 | C17—C16—H16 | 119.0 |
| H5A—C5—H5C | 109.5 | C15—C16—H16 | 119.0 |
| H5B—C5—H5C | 109.5 | C16—C17—C19 | 117.90 (10) |
| C4—C6—C7 | 121.31 (10) | C16—C17—C18 | 120.18 (10) |
| C4—C6—H6 | 119.3 | C19—C17—C18 | 121.92 (10) |
| C7—C6—H6 | 119.3 | C17—C18—H18A | 109.5 |
| C6—C7—C1 | 118.89 (10) | C17—C18—H18B | 109.5 |
| C6—C7—N1 | 126.84 (10) | H18A—C18—H18B | 109.5 |
| C1—C7—N1 | 114.20 (10) | C17—C18—H18C | 109.5 |
| C8—N1—C7 | 121.58 (10) | H18A—C18—H18C | 109.5 |
| N1—C8—C9 | 121.61 (10) | H18B—C18—H18C | 109.5 |
| N1—C8—H8 | 119.2 | C20—C19—C17 | 121.49 (10) |
| C9—C8—H8 | 119.2 | C20—C19—H19 | 119.3 |
| N2—C9—C10 | 123.29 (10) | C17—C19—H19 | 119.3 |
| N2—C9—C8 | 114.60 (9) | C19—C20—C21 | 120.05 (10) |
| C10—C9—C8 | 122.07 (10) | C19—C20—H20 | 120.0 |
| C11—C10—C9 | 118.58 (10) | C21—C20—H20 | 120.0 |
| C11—C10—H10 | 120.7 | O2—C21—C20 | 118.06 (9) |
| C9—C10—H10 | 120.7 | O2—C21—C15 | 122.20 (10) |
| C10—C11—C12 | 118.84 (10) | C20—C21—C15 | 119.72 (9) |
| C10—C11—H11 | 120.6 | C21—O2—H2A | 112.5 (10) |
| O1—C1—C2—C3 | 178.93 (11) | C11—C12—C13—C14 | 179.63 (10) |
| C7—C1—C2—C3 | −0.42 (18) | C10—C9—N2—C13 | −1.22 (16) |
| C1—C2—C3—C4 | −0.16 (18) | C8—C9—N2—C13 | 176.55 (9) |
| C2—C3—C4—C6 | 0.66 (18) | C12—C13—N2—C9 | 1.05 (15) |
| C2—C3—C4—C5 | −176.69 (12) | C14—C13—N2—C9 | −178.70 (9) |
| C3—C4—C6—C7 | −0.61 (17) | N2—C13—C14—N3 | −15.80 (16) |
| C5—C4—C6—C7 | 176.73 (11) | C12—C13—C14—N3 | 164.44 (11) |
| C4—C6—C7—C1 | 0.06 (17) | C13—C14—N3—C15 | −177.17 (9) |
| C4—C6—C7—N1 | −176.84 (11) | C14—N3—C15—C16 | 16.85 (16) |
| O1—C1—C7—C6 | −178.88 (10) | C14—N3—C15—C21 | −164.27 (10) |
| C2—C1—C7—C6 | 0.47 (17) | C21—C15—C16—C17 | 1.35 (16) |
| O1—C1—C7—N1 | −1.61 (16) | N3—C15—C16—C17 | −179.79 (10) |
| C2—C1—C7—N1 | 177.74 (10) | C15—C16—C17—C19 | −0.49 (16) |
| C6—C7—N1—C8 | −3.83 (18) | C15—C16—C17—C18 | −179.90 (10) |
| C1—C7—N1—C8 | 179.15 (10) | C16—C17—C19—C20 | −0.50 (16) |
| C7—N1—C8—C9 | 176.17 (10) | C18—C17—C19—C20 | 178.90 (10) |
| N1—C8—C9—N2 | 176.83 (10) | C17—C19—C20—C21 | 0.60 (17) |
| N1—C8—C9—C10 | −5.37 (17) | C19—C20—C21—O2 | 178.48 (10) |
| N2—C9—C10—C11 | 0.45 (17) | C19—C20—C21—C15 | 0.29 (16) |
| C8—C9—C10—C11 | −177.16 (10) | C16—C15—C21—O2 | −179.34 (10) |
| C9—C10—C11—C12 | 0.52 (17) | N3—C15—C21—O2 | 1.71 (15) |
| C10—C11—C12—C13 | −0.68 (17) | C16—C15—C21—C20 | −1.24 (15) |
| C11—C12—C13—N2 | −0.12 (17) | N3—C15—C21—C20 | 179.82 (10) |
| H··· | ||||
| O2—H2A···O3 | 0.836 (17) | 1.960 (17) | 2.7592 (12) | 159.6 (15) |
| O2—H2A···N3 | 0.836 (17) | 2.347 (15) | 2.7624 (12) | 111.3 (12) |
| O1—H1A···N1 | 0.86 (2) | 2.120 (19) | 2.6722 (13) | 121.7 (16) |
| O3—H3D···N2 | 0.812 (16) | 2.187 (16) | 2.9865 (12) | 168.0 (16) |
| O3—H3D···N3 | 0.812 (16) | 2.569 (16) | 3.0142 (9) | 115.9 (14) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O2—H2 | 0.836 (17) | 1.960 (17) | 2.7592 (12) | 159.6 (15) |
| O2—H2 | 0.836 (17) | 2.347 (15) | 2.7624 (12) | 111.3 (12) |
| O1—H1 | 0.86 (2) | 2.120 (19) | 2.6722 (13) | 121.7 (16) |
| O3—H3 | 0.812 (16) | 2.187 (16) | 2.9865 (12) | 168.0 (16) |
| O3—H3 | 0.812 (16) | 2.569 (16) | 3.0142 (9) | 115.9 (14) |