Literature DB >> 22199713

Bis{2,6-bis-[(2-hy-droxy-5-methyl-phen-yl)imino-meth-yl]pyridine} monohydrate.

Muhammet Kose1, Vickie McKee.   

Abstract

The title compound, 2C(21)H(19)N(3)O(2)·H(2)O, was synthesized by a Schiff base condensation of 2,6-diformyl-pyridine with 2-amino-4-methyl-phenol in ethanol. In the crystal, two mol-ecules of 2,6-bis-[(2-hy-droxy-5-methyl-phen-yl)imino-meth-yl]pyridine dimer-ize via hydrogen bonding to a water mol-ecule, which lies on a twofold axis. There are also intra-molecular phenol-imine hydrogen bonds. The dimers are further linked via π-π (phen-yl-pyridine) [centroid-centroid distance = 3.707 (2) Å] and π-π edge-to-edge [3.392 (2) Å] inter-actions. The dihedral angles between the central ring and the two pendant rings are 11.46 (8) and 2.06 (8)° while the pendant rings make a dihedral angle of 10.14 (8)°.

Entities:  

Year:  2011        PMID: 22199713      PMCID: PMC3238860          DOI: 10.1107/S1600536811045399

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Gonzalez et al. (2008 ▶); Sun et al. (2006 ▶).

Experimental

Crystal data

2C21H19N3O2·H2O M = 708.80 Monoclinic, a = 23.8510 (13) Å b = 12.9688 (7) Å c = 12.3835 (7) Å β = 114.077 (1)° V = 3497.2 (3) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 150 K 0.60 × 0.28 × 0.11 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008 ▶) T min = 0.947, T max = 0.991 19364 measured reflections 5005 independent reflections 3919 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.124 S = 1.06 5005 reflections 251 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.36 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811045399/aa2032sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811045399/aa2032Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811045399/aa2032Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C21H19N3O2·H2OF(000) = 1496
Mr = 708.80Dx = 1.346 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 5957 reflections
a = 23.8510 (13) Åθ = 2.3–29.8°
b = 12.9688 (7) ŵ = 0.09 mm1
c = 12.3835 (7) ÅT = 150 K
β = 114.077 (1)°Block, yellow
V = 3497.2 (3) Å30.60 × 0.28 × 0.11 mm
Z = 4
Bruker APEXII CCD diffractometer5005 independent reflections
Radiation source: fine-focus sealed tube3919 reflections with I > 2σ(I)
graphiteRint = 0.024
φ and ω scansθmax = 29.8°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008)h = −33→33
Tmin = 0.947, Tmax = 0.991k = −17→18
19364 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.124H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0642P)2 + 1.5272P] where P = (Fo2 + 2Fc2)/3
5005 reflections(Δ/σ)max = 0.001
251 parametersΔρmax = 0.36 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.33231 (5)0.57957 (7)0.14787 (9)0.0363 (2)
H1A0.3535 (9)0.5552 (15)0.1120 (17)0.054*
C10.32840 (6)0.50007 (9)0.21682 (10)0.0263 (2)
C20.29313 (6)0.51152 (9)0.28174 (11)0.0295 (3)
H20.27240.57470.27920.035*
C30.28826 (5)0.43063 (9)0.35006 (11)0.0285 (2)
H30.26410.43910.39440.034*
C40.31806 (5)0.33642 (9)0.35549 (10)0.0259 (2)
C50.30934 (6)0.24734 (10)0.42542 (12)0.0344 (3)
H5A0.32200.18320.40000.052*
H5B0.26600.24260.41190.052*
H5C0.33440.25840.50980.052*
C60.35360 (5)0.32612 (9)0.29095 (10)0.0243 (2)
H60.37440.26300.29420.029*
C70.35935 (5)0.40707 (9)0.22099 (9)0.0232 (2)
N10.39157 (5)0.40486 (7)0.14721 (8)0.0250 (2)
C80.42258 (5)0.32597 (9)0.14243 (9)0.0231 (2)
H80.42610.26910.19310.028*
C90.45300 (5)0.32110 (8)0.06030 (9)0.0209 (2)
C100.44553 (5)0.39831 (9)−0.02331 (10)0.0250 (2)
H100.42180.4580−0.02680.030*
C110.47345 (6)0.38588 (9)−0.10081 (10)0.0274 (2)
H110.46950.4372−0.15820.033*
C120.50726 (5)0.29722 (9)−0.09334 (10)0.0251 (2)
H120.52650.2866−0.14610.030*
C130.51268 (5)0.22380 (8)−0.00723 (9)0.0205 (2)
N20.48638 (4)0.23536 (7)0.06979 (8)0.02020 (19)
C140.54842 (5)0.12966 (8)−0.00076 (9)0.0219 (2)
H140.55820.1125−0.06570.026*
N30.56667 (4)0.07051 (7)0.08909 (8)0.02191 (19)
C150.60324 (5)−0.01660 (8)0.09325 (9)0.0199 (2)
C160.63466 (5)−0.03133 (8)0.02040 (9)0.0210 (2)
H160.63190.0200−0.03620.025*
C170.66968 (5)−0.11873 (8)0.02855 (9)0.0218 (2)
C180.70282 (5)−0.13137 (9)−0.05144 (10)0.0276 (2)
H18A0.6833−0.0877−0.12150.041*
H18B0.7008−0.2036−0.07580.041*
H18C0.7459−0.1109−0.00900.041*
C190.67339 (5)−0.19289 (8)0.11334 (10)0.0242 (2)
H190.6969−0.25360.12000.029*
C200.64359 (5)−0.17978 (9)0.18780 (10)0.0240 (2)
H200.6471−0.23090.24520.029*
C210.60848 (5)−0.09168 (8)0.17862 (9)0.0212 (2)
O20.57884 (4)−0.08313 (7)0.25167 (7)0.02766 (19)
H2A0.5591 (7)−0.0281 (13)0.2415 (13)0.033*
O30.50000.07316 (9)0.25000.0278 (3)
H3D0.4959 (8)0.1100 (13)0.1942 (14)0.042*
U11U22U33U12U13U23
O10.0520 (6)0.0268 (4)0.0359 (5)0.0110 (4)0.0239 (4)0.0038 (4)
C10.0301 (6)0.0243 (5)0.0224 (5)0.0038 (4)0.0088 (4)−0.0028 (4)
C20.0304 (6)0.0275 (6)0.0300 (6)0.0074 (5)0.0119 (5)−0.0056 (5)
C30.0263 (5)0.0334 (6)0.0272 (6)0.0027 (5)0.0122 (5)−0.0071 (5)
C40.0242 (5)0.0290 (6)0.0251 (5)0.0010 (4)0.0106 (4)−0.0033 (4)
C50.0364 (7)0.0364 (7)0.0386 (7)0.0026 (5)0.0236 (6)0.0021 (5)
C60.0242 (5)0.0247 (5)0.0241 (5)0.0043 (4)0.0099 (4)−0.0023 (4)
C70.0237 (5)0.0249 (5)0.0205 (5)0.0026 (4)0.0084 (4)−0.0036 (4)
N10.0278 (5)0.0258 (5)0.0226 (5)0.0032 (4)0.0115 (4)−0.0022 (4)
C80.0235 (5)0.0252 (5)0.0210 (5)0.0021 (4)0.0097 (4)−0.0007 (4)
C90.0203 (5)0.0229 (5)0.0193 (5)0.0002 (4)0.0077 (4)−0.0021 (4)
C100.0268 (5)0.0223 (5)0.0249 (5)0.0021 (4)0.0098 (4)0.0009 (4)
C110.0315 (6)0.0270 (5)0.0241 (5)0.0007 (4)0.0117 (5)0.0056 (4)
C120.0270 (5)0.0302 (6)0.0199 (5)0.0012 (4)0.0115 (4)0.0021 (4)
C130.0207 (5)0.0242 (5)0.0168 (4)0.0003 (4)0.0079 (4)−0.0007 (4)
N20.0205 (4)0.0226 (4)0.0182 (4)0.0003 (3)0.0086 (3)−0.0012 (3)
C140.0232 (5)0.0267 (5)0.0185 (5)0.0021 (4)0.0110 (4)−0.0009 (4)
N30.0248 (4)0.0221 (4)0.0224 (4)0.0006 (3)0.0133 (4)−0.0004 (3)
C150.0224 (5)0.0201 (5)0.0182 (5)0.0001 (4)0.0093 (4)−0.0011 (4)
C160.0231 (5)0.0215 (5)0.0203 (5)0.0003 (4)0.0109 (4)0.0008 (4)
C170.0217 (5)0.0225 (5)0.0223 (5)−0.0011 (4)0.0102 (4)−0.0031 (4)
C180.0295 (6)0.0278 (6)0.0307 (6)0.0032 (5)0.0176 (5)−0.0011 (4)
C190.0235 (5)0.0218 (5)0.0268 (5)0.0022 (4)0.0097 (4)0.0000 (4)
C200.0263 (5)0.0232 (5)0.0215 (5)−0.0003 (4)0.0086 (4)0.0034 (4)
C210.0230 (5)0.0246 (5)0.0171 (5)−0.0023 (4)0.0093 (4)−0.0008 (4)
O20.0370 (5)0.0287 (4)0.0239 (4)0.0042 (4)0.0191 (4)0.0038 (3)
O30.0386 (7)0.0270 (6)0.0266 (6)0.0000.0223 (5)0.000
O1—C11.3660 (15)C11—H110.9500
O1—H1A0.86 (2)C12—C131.3957 (15)
C1—C21.3884 (16)C12—H120.9500
C1—C71.4040 (15)C13—N21.3467 (13)
C2—C31.3821 (18)C13—C141.4725 (15)
C2—H20.9500C14—N31.2731 (14)
C3—C41.4012 (16)C14—H140.9500
C3—H30.9500N3—C151.4153 (13)
C4—C61.3885 (15)C15—C161.4013 (14)
C4—C51.5083 (17)C15—C211.4048 (14)
C5—H5A0.9800C16—C171.3870 (15)
C5—H5B0.9800C16—H160.9500
C5—H5C0.9800C17—C191.3998 (15)
C6—C71.4030 (16)C17—C181.5072 (15)
C6—H60.9500C18—H18A0.9800
C7—N11.4139 (14)C18—H18B0.9800
N1—C81.2778 (14)C18—H18C0.9800
C8—C91.4721 (15)C19—C201.3853 (15)
C8—H80.9500C19—H190.9500
C9—N21.3445 (14)C20—C211.3934 (15)
C9—C101.3985 (15)C20—H200.9500
C10—C111.3827 (16)C21—O21.3610 (13)
C10—H100.9500O2—H2A0.836 (17)
C11—C121.3857 (16)O3—H3D0.812 (16)
C1—O1—H1A104.5 (13)C12—C11—H11120.6
O1—C1—C2119.56 (10)C11—C12—C13119.14 (10)
O1—C1—C7120.15 (10)C11—C12—H12120.4
C2—C1—C7120.28 (11)C13—C12—H12120.4
C3—C2—C1119.70 (10)N2—C13—C12122.72 (10)
C3—C2—H2120.2N2—C13—C14118.71 (9)
C1—C2—H2120.2C12—C13—C14118.57 (9)
C2—C3—C4121.56 (11)C9—N2—C13117.41 (9)
C2—C3—H3119.2N3—C14—C13122.07 (9)
C4—C3—H3119.2N3—C14—H14119.0
C6—C4—C3118.25 (11)C13—C14—H14119.0
C6—C4—C5121.09 (10)C14—N3—C15119.91 (9)
C3—C4—C5120.61 (10)C16—C15—C21118.89 (9)
C4—C5—H5A109.5C16—C15—N3124.68 (9)
C4—C5—H5B109.5C21—C15—N3116.42 (9)
H5A—C5—H5B109.5C17—C16—C15121.93 (10)
C4—C5—H5C109.5C17—C16—H16119.0
H5A—C5—H5C109.5C15—C16—H16119.0
H5B—C5—H5C109.5C16—C17—C19117.90 (10)
C4—C6—C7121.31 (10)C16—C17—C18120.18 (10)
C4—C6—H6119.3C19—C17—C18121.92 (10)
C7—C6—H6119.3C17—C18—H18A109.5
C6—C7—C1118.89 (10)C17—C18—H18B109.5
C6—C7—N1126.84 (10)H18A—C18—H18B109.5
C1—C7—N1114.20 (10)C17—C18—H18C109.5
C8—N1—C7121.58 (10)H18A—C18—H18C109.5
N1—C8—C9121.61 (10)H18B—C18—H18C109.5
N1—C8—H8119.2C20—C19—C17121.49 (10)
C9—C8—H8119.2C20—C19—H19119.3
N2—C9—C10123.29 (10)C17—C19—H19119.3
N2—C9—C8114.60 (9)C19—C20—C21120.05 (10)
C10—C9—C8122.07 (10)C19—C20—H20120.0
C11—C10—C9118.58 (10)C21—C20—H20120.0
C11—C10—H10120.7O2—C21—C20118.06 (9)
C9—C10—H10120.7O2—C21—C15122.20 (10)
C10—C11—C12118.84 (10)C20—C21—C15119.72 (9)
C10—C11—H11120.6C21—O2—H2A112.5 (10)
O1—C1—C2—C3178.93 (11)C11—C12—C13—C14179.63 (10)
C7—C1—C2—C3−0.42 (18)C10—C9—N2—C13−1.22 (16)
C1—C2—C3—C4−0.16 (18)C8—C9—N2—C13176.55 (9)
C2—C3—C4—C60.66 (18)C12—C13—N2—C91.05 (15)
C2—C3—C4—C5−176.69 (12)C14—C13—N2—C9−178.70 (9)
C3—C4—C6—C7−0.61 (17)N2—C13—C14—N3−15.80 (16)
C5—C4—C6—C7176.73 (11)C12—C13—C14—N3164.44 (11)
C4—C6—C7—C10.06 (17)C13—C14—N3—C15−177.17 (9)
C4—C6—C7—N1−176.84 (11)C14—N3—C15—C1616.85 (16)
O1—C1—C7—C6−178.88 (10)C14—N3—C15—C21−164.27 (10)
C2—C1—C7—C60.47 (17)C21—C15—C16—C171.35 (16)
O1—C1—C7—N1−1.61 (16)N3—C15—C16—C17−179.79 (10)
C2—C1—C7—N1177.74 (10)C15—C16—C17—C19−0.49 (16)
C6—C7—N1—C8−3.83 (18)C15—C16—C17—C18−179.90 (10)
C1—C7—N1—C8179.15 (10)C16—C17—C19—C20−0.50 (16)
C7—N1—C8—C9176.17 (10)C18—C17—C19—C20178.90 (10)
N1—C8—C9—N2176.83 (10)C17—C19—C20—C210.60 (17)
N1—C8—C9—C10−5.37 (17)C19—C20—C21—O2178.48 (10)
N2—C9—C10—C110.45 (17)C19—C20—C21—C150.29 (16)
C8—C9—C10—C11−177.16 (10)C16—C15—C21—O2−179.34 (10)
C9—C10—C11—C120.52 (17)N3—C15—C21—O21.71 (15)
C10—C11—C12—C13−0.68 (17)C16—C15—C21—C20−1.24 (15)
C11—C12—C13—N2−0.12 (17)N3—C15—C21—C20179.82 (10)
D—H···AD—HH···AD···AD—H···A
O2—H2A···O30.836 (17)1.960 (17)2.7592 (12)159.6 (15)
O2—H2A···N30.836 (17)2.347 (15)2.7624 (12)111.3 (12)
O1—H1A···N10.86 (2)2.120 (19)2.6722 (13)121.7 (16)
O3—H3D···N20.812 (16)2.187 (16)2.9865 (12)168.0 (16)
O3—H3D···N30.812 (16)2.569 (16)3.0142 (9)115.9 (14)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2A⋯O30.836 (17)1.960 (17)2.7592 (12)159.6 (15)
O2—H2A⋯N30.836 (17)2.347 (15)2.7624 (12)111.3 (12)
O1—H1A⋯N10.86 (2)2.120 (19)2.6722 (13)121.7 (16)
O3—H3D⋯N20.812 (16)2.187 (16)2.9865 (12)168.0 (16)
O3—H3D⋯N30.812 (16)2.569 (16)3.0142 (9)115.9 (14)
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