Literature DB >> 22199712

(4aS,4bR,7R,10aS)-3,7-Dimethyl-10a-(propan-2-yl)-1,4,4a,4b,5,6,7,8,10,10a-deca-hydro-phenanthrene-1,4-dione.

Ignez Caracelli, Julio Zukerman-Schpector, André T Lousada Machado, Timothy J Brocksom, M Lúcia Ferreira, Edward R T Tiekink.   

Abstract

In the title compound, C(19)H(26)O(2), the A ring adopts a chair conformation, whereas the B and C rings both adopt distorted half-chair conformations with the quaternary C atom common to both rings lying 0.577 (3) and 0.648 (3) Å out of the approximate plane defined by the remaining five C atoms (r.m.s. deviations = 0.1386 and 0.1156 Å) for the B and C rings, respectively. Mol-ecules are assembled in the crystal through C-H⋯O inter-actions involving both carbonyl O atoms, which lead to supra-molecular chains aligned along the b axis.

Entities:  

Year:  2011        PMID: 22199712      PMCID: PMC3238859          DOI: 10.1107/S160053681104517X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biological activity of some diterpene compounds, see: Guo et al. (2011 ▶); Slusarczyk et al. (2011 ▶). For the synthesis, see: Ferreira (2002 ▶). For conformational analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C19H26O2 M = 286.40 Monoclinic, a = 10.882 (1) Å b = 6.6015 (9) Å c = 11.656 (1) Å β = 102.53 (2)° V = 817.40 (16) Å3 Z = 2 Mo Kα radiation μ = 0.07 mm−1 T = 290 K 0.15 × 0.10 × 0.08 mm

Data collection

Enraf–Nonius CAD-4 Mach 3 diffractometer 2470 measured reflections 2334 independent reflections 1100 reflections with I > 2σ(I) R int = 0.045 3 standard reflections every 30 min intensity decay: 1.4%

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.122 S = 0.98 2334 reflections 191 parameters 1 restraint H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.18 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: MolEN (Fair, 1990 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶), DIAMOND (Brandenburg, 2006 ▶) and MarvinSketch (Chemaxon, 2009 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681104517X/hg5119sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681104517X/hg5119Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681104517X/hg5119Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H26O2F(000) = 312
Mr = 286.40Dx = 1.164 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 25 reflections
a = 10.882 (1) Åθ = 10.3–18.3°
b = 6.6015 (9) ŵ = 0.07 mm1
c = 11.656 (1) ÅT = 290 K
β = 102.53 (2)°Irregular, colourless
V = 817.40 (16) Å30.15 × 0.10 × 0.08 mm
Z = 2
Enraf–Nonius CAD-4 Mach 3 diffractometerRint = 0.045
Radiation source: fine-focus sealed tubeθmax = 29.0°, θmin = 1.8°
graphiteh = −14→14
ω/–2θ scansk = 0→8
2470 measured reflectionsl = 0→15
2334 independent reflections3 standard reflections every 30 min
1100 reflections with I > 2σ(I) intensity decay: 1.4%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.122H-atom parameters constrained
S = 0.98w = 1/[σ2(Fo2) + (0.058P)2] where P = (Fo2 + 2Fc2)/3
2334 reflections(Δ/σ)max < 0.001
191 parametersΔρmax = 0.18 e Å3
1 restraintΔρmin = −0.18 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.0639 (2)0.5986 (4)0.7953 (2)0.0384 (6)
H10.04370.46100.81670.046*
C20.2045 (2)0.5917 (4)0.7858 (2)0.0343 (6)
H20.22030.45530.75910.041*
C30.2885 (2)0.6188 (4)0.9059 (2)0.0370 (6)
C40.3242 (2)0.8281 (5)0.9474 (3)0.0410 (7)
C50.2941 (3)0.9818 (5)0.8724 (2)0.0432 (7)
H50.31201.11280.90050.052*
C60.2337 (3)0.9551 (4)0.7467 (2)0.0415 (7)
C70.2397 (3)0.7433 (4)0.6959 (2)0.0372 (7)
C80.1491 (3)0.7223 (5)0.5767 (2)0.0471 (7)
H8A0.15650.84160.53000.057*
H8B0.17410.60620.53610.057*
C90.0148 (3)0.6975 (5)0.5837 (2)0.0467 (7)
H9−0.04610.72330.51590.056*
C10−0.0248 (2)0.6416 (4)0.6784 (2)0.0422 (7)
C11−0.1614 (3)0.6269 (6)0.6815 (3)0.0566 (8)
H11A−0.18130.48780.69720.068*
H11B−0.21190.66410.60520.068*
C12−0.1952 (3)0.7642 (6)0.7752 (3)0.0559 (9)
H12−0.28150.73230.78130.067*
C13−0.1084 (3)0.7170 (6)0.8930 (3)0.0537 (8)
H13A−0.12430.57990.91590.064*
H13B−0.12740.80830.95200.064*
C140.0305 (2)0.7376 (5)0.8899 (2)0.0437 (7)
H14A0.08190.70220.96610.052*
H14B0.04850.87710.87330.052*
C150.3875 (3)0.8537 (6)1.0739 (2)0.0571 (9)
H15A0.40980.99341.08900.086*
H15B0.46210.77181.09140.086*
H15C0.33110.81241.12250.086*
C160.3807 (3)0.7097 (5)0.6859 (2)0.0479 (7)
H160.43380.72770.76470.057*
C170.4060 (3)0.4981 (6)0.6445 (3)0.0711 (11)
H17A0.37980.39920.69470.107*
H17B0.49430.48270.64750.107*
H17C0.35970.47880.56530.107*
C180.4232 (4)0.8654 (8)0.6055 (4)0.0969 (16)
H18A0.40790.99950.63110.145*
H18B0.37690.84570.52630.145*
H18C0.51150.84880.60860.145*
C19−0.1910 (4)0.9882 (7)0.7419 (3)0.0748 (11)
H19A−0.24681.01100.66710.112*
H19B−0.10681.02400.73720.112*
H19C−0.21691.07000.80050.112*
O10.32371 (19)0.4746 (3)0.96994 (17)0.0523 (6)
O20.1854 (2)1.0979 (3)0.6885 (2)0.0685 (7)
U11U22U33U12U13U23
C10.0447 (15)0.0296 (14)0.0405 (14)−0.0061 (13)0.0087 (11)0.0004 (13)
C20.0455 (15)0.0231 (14)0.0352 (13)0.0008 (13)0.0106 (12)−0.0005 (12)
C30.0402 (15)0.0341 (16)0.0387 (14)0.0034 (13)0.0130 (12)0.0045 (14)
C40.0362 (13)0.0428 (18)0.0443 (16)−0.0067 (13)0.0093 (12)−0.0088 (15)
C50.0481 (16)0.0291 (15)0.0515 (16)−0.0075 (15)0.0089 (13)−0.0057 (16)
C60.0456 (15)0.0309 (16)0.0481 (17)−0.0071 (14)0.0100 (13)0.0028 (15)
C70.0477 (15)0.0298 (16)0.0355 (14)−0.0007 (13)0.0121 (12)0.0008 (12)
C80.0636 (19)0.0435 (18)0.0357 (14)0.0031 (16)0.0135 (13)0.0008 (14)
C90.0567 (18)0.0395 (17)0.0395 (15)−0.0014 (14)0.0005 (14)−0.0069 (14)
C100.0456 (16)0.0366 (17)0.0421 (15)−0.0070 (13)0.0041 (12)−0.0100 (13)
C110.0468 (17)0.061 (2)0.0570 (18)−0.0093 (17)0.0007 (14)0.0006 (18)
C120.0418 (15)0.069 (2)0.0583 (19)−0.0028 (16)0.0130 (14)0.0004 (18)
C130.0484 (17)0.064 (2)0.0515 (17)0.0008 (17)0.0178 (13)0.0047 (17)
C140.0427 (15)0.0497 (19)0.0393 (15)−0.0011 (14)0.0103 (12)−0.0004 (14)
C150.0494 (17)0.070 (2)0.0501 (18)−0.0090 (18)0.0060 (14)−0.0125 (18)
C160.0486 (17)0.0531 (19)0.0451 (15)0.0001 (16)0.0170 (13)0.0074 (16)
C170.076 (2)0.073 (3)0.070 (2)0.021 (2)0.0293 (18)−0.007 (2)
C180.081 (3)0.098 (4)0.127 (4)0.004 (3)0.058 (3)0.046 (3)
C190.079 (2)0.073 (3)0.075 (2)0.020 (2)0.0200 (19)0.003 (2)
O10.0620 (13)0.0425 (13)0.0506 (12)0.0052 (11)0.0081 (10)0.0102 (11)
O20.0952 (18)0.0276 (12)0.0723 (15)0.0052 (13)−0.0047 (13)0.0091 (12)
C1—C101.515 (4)C11—H11B0.9700
C1—C141.538 (4)C12—C131.521 (4)
C1—C21.559 (3)C12—C191.532 (6)
C1—H10.9800C12—H120.9800
C2—C31.507 (4)C13—C141.526 (4)
C2—C71.556 (3)C13—H13A0.9700
C2—H20.9800C13—H13B0.9700
C3—O11.219 (3)C14—H14A0.9700
C3—C41.488 (4)C14—H14B0.9700
C4—C51.333 (4)C15—H15A0.9600
C4—C151.495 (4)C15—H15B0.9600
C5—C61.480 (4)C15—H15C0.9600
C5—H50.9300C16—C171.522 (5)
C6—O21.213 (4)C16—C181.528 (5)
C6—C71.526 (4)C16—H160.9800
C7—C81.525 (4)C17—H17A0.9600
C7—C161.580 (4)C17—H17B0.9600
C8—C91.491 (4)C17—H17C0.9600
C8—H8A0.9700C18—H18A0.9600
C8—H8B0.9700C18—H18B0.9600
C9—C101.322 (4)C18—H18C0.9600
C9—H90.9300C19—H19A0.9600
C10—C111.498 (4)C19—H19B0.9600
C11—C121.524 (5)C19—H19C0.9600
C11—H11A0.9700
C10—C1—C14109.2 (2)C13—C12—C11109.0 (3)
C10—C1—C2112.7 (2)C13—C12—C19112.3 (3)
C14—C1—C2117.2 (2)C11—C12—C19111.6 (3)
C10—C1—H1105.6C13—C12—H12107.9
C14—C1—H1105.6C11—C12—H12107.9
C2—C1—H1105.6C19—C12—H12107.9
C3—C2—C7111.2 (2)C12—C13—C14112.6 (2)
C3—C2—C1109.7 (2)C12—C13—H13A109.1
C7—C2—C1114.7 (2)C14—C13—H13A109.1
C3—C2—H2106.9C12—C13—H13B109.1
C7—C2—H2106.9C14—C13—H13B109.1
C1—C2—H2106.9H13A—C13—H13B107.8
O1—C3—C4120.0 (2)C13—C14—C1110.7 (2)
O1—C3—C2121.5 (3)C13—C14—H14A109.5
C4—C3—C2118.4 (2)C1—C14—H14A109.5
C5—C4—C3118.9 (2)C13—C14—H14B109.5
C5—C4—C15123.8 (3)C1—C14—H14B109.5
C3—C4—C15117.2 (3)H14A—C14—H14B108.1
C4—C5—C6123.5 (3)C4—C15—H15A109.5
C4—C5—H5118.3C4—C15—H15B109.5
C6—C5—H5118.3H15A—C15—H15B109.5
O2—C6—C5120.4 (3)C4—C15—H15C109.5
O2—C6—C7123.0 (2)H15A—C15—H15C109.5
C5—C6—C7116.5 (2)H15B—C15—H15C109.5
C8—C7—C6111.3 (2)C17—C16—C18108.9 (3)
C8—C7—C2110.5 (2)C17—C16—C7113.4 (3)
C6—C7—C2106.9 (2)C18—C16—C7112.3 (3)
C8—C7—C16111.5 (2)C17—C16—H16107.3
C6—C7—C16106.3 (2)C18—C16—H16107.3
C2—C7—C16110.1 (2)C7—C16—H16107.3
C9—C8—C7114.1 (2)C16—C17—H17A109.5
C9—C8—H8A108.7C16—C17—H17B109.5
C7—C8—H8A108.7H17A—C17—H17B109.5
C9—C8—H8B108.7C16—C17—H17C109.5
C7—C8—H8B108.7H17A—C17—H17C109.5
H8A—C8—H8B107.6H17B—C17—H17C109.5
C10—C9—C8125.3 (3)C16—C18—H18A109.5
C10—C9—H9117.4C16—C18—H18B109.5
C8—C9—H9117.4H18A—C18—H18B109.5
C9—C10—C11122.9 (3)C16—C18—H18C109.5
C9—C10—C1122.9 (2)H18A—C18—H18C109.5
C11—C10—C1114.1 (2)H18B—C18—H18C109.5
C10—C11—C12111.9 (3)C12—C19—H19A109.5
C10—C11—H11A109.2C12—C19—H19B109.5
C12—C11—H11A109.2H19A—C19—H19B109.5
C10—C11—H11B109.2C12—C19—H19C109.5
C12—C11—H11B109.2H19A—C19—H19C109.5
H11A—C11—H11B107.9H19B—C19—H19C109.5
C10—C1—C2—C3161.1 (2)C1—C2—C7—C16−175.1 (2)
C14—C1—C2—C333.1 (3)C6—C7—C8—C9−76.9 (3)
C10—C1—C2—C735.2 (3)C2—C7—C8—C941.7 (3)
C14—C1—C2—C7−92.8 (3)C16—C7—C8—C9164.6 (2)
C7—C2—C3—O1−143.0 (3)C7—C8—C9—C10−18.3 (4)
C1—C2—C3—O189.0 (3)C8—C9—C10—C11177.6 (3)
C7—C2—C3—C439.3 (3)C8—C9—C10—C11.2 (5)
C1—C2—C3—C4−88.6 (3)C14—C1—C10—C9122.4 (3)
O1—C3—C4—C5174.1 (3)C2—C1—C10—C9−9.7 (4)
C2—C3—C4—C5−8.2 (4)C14—C1—C10—C11−54.3 (3)
O1—C3—C4—C15−8.5 (4)C2—C1—C10—C11173.6 (2)
C2—C3—C4—C15169.2 (2)C9—C10—C11—C12−121.1 (3)
C3—C4—C5—C6−4.0 (4)C1—C10—C11—C1255.6 (4)
C15—C4—C5—C6178.8 (3)C10—C11—C12—C13−54.3 (4)
C4—C5—C6—O2164.9 (3)C10—C11—C12—C1970.3 (4)
C4—C5—C6—C7−16.9 (4)C11—C12—C13—C1456.3 (4)
O2—C6—C7—C8−15.4 (4)C19—C12—C13—C14−67.8 (4)
C5—C6—C7—C8166.5 (2)C12—C13—C14—C1−57.5 (4)
O2—C6—C7—C2−136.2 (3)C10—C1—C14—C1354.0 (3)
C5—C6—C7—C245.7 (3)C2—C1—C14—C13−176.3 (2)
O2—C6—C7—C16106.2 (3)C8—C7—C16—C17−62.7 (3)
C5—C6—C7—C16−72.0 (3)C6—C7—C16—C17175.8 (2)
C3—C2—C7—C8−176.7 (2)C2—C7—C16—C1760.4 (3)
C1—C2—C7—C8−51.5 (3)C8—C7—C16—C1861.2 (4)
C3—C2—C7—C6−55.4 (3)C6—C7—C16—C18−60.3 (3)
C1—C2—C7—C669.8 (3)C2—C7—C16—C18−175.7 (3)
C3—C2—C7—C1659.6 (3)
D—H···AD—HH···AD···AD—H···A
C2—H2···O2i0.982.503.443 (3)161
C5—H5···O1ii0.932.523.438 (4)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯O2i0.982.503.443 (3)161
C5—H5⋯O1ii0.932.523.438 (4)171

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  neo-Clerodane diterpenes from Ajuga ciliata Bunge and their neuroprotective activities.

Authors:  Ping Guo; Yushan Li; Jing Xu; Yuanqiang Guo; Da-Qing Jin; Jie Gao; Wenbin Hou; Tiejun Zhang
Journal:  Fitoterapia       Date:  2011-07-23       Impact factor: 2.882

3.  Antiplasmodial and antitrypanosomal activity of tanshinone-type diterpenoids from Salvia miltiorrhiza.

Authors:  Sylwester Slusarczyk; Stefanie Zimmermann; Marcel Kaiser; Adam Matkowski; Matthias Hamburger; Michael Adams
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  3 in total

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