Literature DB >> 22199692

4-Hy-droxy-3-meth-oxy-benzaldehyde-nicotinamide (1/1).

Fiona N-F How, M S Amalina, Hamid Khaledi, Hapipah Mohd Ali.   

Abstract

In the title compound, C(6)H(6)N(2)O·C(8)H(8)O(3), an equimolar co-crystal of nicotinamide and vanillin, the aromatic ring and the amide fragment of the nicotinamide mol-ecule make a dihedral angle of 32.6 (2)°. The vanillin mol-ecule is almost planar, with an r.m.s. deviation for all non-H atoms of 0.0094 Å. The vaniline and nicotinamide aromatic rings are nearly coplanar, the dihedral angle between them being 3.20 (9)°. In the crystal, the two components are linked through N-H⋯O and O-H⋯N hydrogen bonds into chains along the a axis. The chains are connected via C-H⋯O inter-actions, forming a three-dimensional polymeric structure.

Entities:  

Year:  2011        PMID: 22199692      PMCID: PMC3238839          DOI: 10.1107/S1600536811045648

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structure of nicotinamide, see: Miwa et al. (1999 ▶); Li et al. (2011 ▶). For the structure of vanillin, see: Velavan et al. (1995 ▶).

Experimental

Crystal data

C6H6N2O·C8H8O3 M = 274.27 Triclinic, a = 4.8979 (1) Å b = 8.5440 (2) Å c = 15.4713 (4) Å α = 98.108 (1)° β = 92.810 (2)° γ = 94.784 (2)° V = 637.52 (3) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.22 × 0.14 × 0.04 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.977, T max = 0.996 3432 measured reflections 2243 independent reflections 1862 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.112 S = 1.05 2243 reflections 191 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.66 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811045648/pv2471sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811045648/pv2471Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811045648/pv2471Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H6N2O·C8H8O3Z = 2
Mr = 274.27F(000) = 288
Triclinic, P1Dx = 1.429 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 4.8979 (1) ÅCell parameters from 1226 reflections
b = 8.5440 (2) Åθ = 2.6–29.7°
c = 15.4713 (4) ŵ = 0.11 mm1
α = 98.108 (1)°T = 100 K
β = 92.810 (2)°Lath, colorless
γ = 94.784 (2)°0.22 × 0.14 × 0.04 mm
V = 637.52 (3) Å3
Bruker APEXII CCD diffractometer2243 independent reflections
Radiation source: fine-focus sealed tube1862 reflections with I > 2σ(I)
graphiteRint = 0.019
φ and ω scansθmax = 25.3°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −5→5
Tmin = 0.977, Tmax = 0.996k = −10→10
3432 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.112H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0439P)2 + 0.4685P] where P = (Fo2 + 2Fc2)/3
2243 reflections(Δ/σ)max < 0.001
191 parametersΔρmax = 0.66 e Å3
4 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.3651 (3)0.83011 (19)0.61085 (10)0.0359 (4)
O20.8107 (3)0.63328 (16)0.23075 (9)0.0195 (3)
H20.949 (4)0.698 (2)0.2250 (15)0.029*
O30.4028 (3)0.44026 (16)0.25734 (9)0.0218 (3)
C10.3070 (5)0.7306 (3)0.54863 (14)0.0286 (5)
H10.15290.65700.55220.034*
C20.4516 (4)0.7113 (2)0.46701 (13)0.0210 (4)
C30.6726 (4)0.8148 (2)0.45164 (13)0.0221 (5)
H30.73800.90160.49510.026*
C40.7972 (4)0.7912 (2)0.37307 (13)0.0204 (4)
H40.94820.86200.36290.024*
C50.7035 (4)0.6648 (2)0.30888 (12)0.0166 (4)
C60.4793 (4)0.5600 (2)0.32443 (12)0.0176 (4)
C70.3561 (4)0.5847 (2)0.40255 (13)0.0208 (5)
H70.20400.51460.41280.025*
C80.1709 (4)0.3323 (2)0.26827 (14)0.0217 (5)
H8A0.21100.27650.31790.033*
H8B0.13280.25510.21500.033*
H8C0.01030.39170.27930.033*
O40.8254 (3)0.71964 (19)−0.04761 (9)0.0299 (4)
N10.3766 (4)0.6341 (2)−0.07875 (11)0.0205 (4)
H1A0.207 (3)0.645 (3)−0.0672 (14)0.025*
H1B0.415 (4)0.586 (2)−0.1293 (11)0.025*
N20.2385 (3)0.80224 (19)0.18395 (10)0.0170 (4)
C90.5840 (4)0.7129 (2)−0.02755 (13)0.0197 (4)
C100.5123 (4)0.7959 (2)0.05932 (12)0.0169 (4)
C110.6653 (4)0.9350 (2)0.09779 (13)0.0201 (4)
H110.81210.98010.06870.024*
C120.5998 (4)1.0066 (2)0.17913 (13)0.0220 (5)
H120.69971.10230.20660.026*
C130.3864 (4)0.9363 (2)0.21971 (13)0.0192 (4)
H130.34290.98560.27570.023*
C140.3015 (4)0.7346 (2)0.10499 (12)0.0162 (4)
H140.19660.63970.07880.019*
U11U22U33U12U13U23
O10.0440 (10)0.0363 (9)0.0266 (9)0.0056 (8)0.0038 (7)0.0006 (7)
O20.0182 (8)0.0217 (7)0.0174 (7)−0.0031 (6)0.0053 (6)0.0004 (6)
O30.0223 (8)0.0214 (7)0.0198 (7)−0.0045 (6)0.0064 (6)−0.0016 (6)
C10.0356 (13)0.0308 (12)0.0189 (10)0.0104 (10)−0.0028 (9)−0.0012 (9)
C20.0226 (11)0.0246 (11)0.0170 (10)0.0074 (8)0.0004 (8)0.0045 (8)
C30.0270 (11)0.0214 (10)0.0165 (10)0.0060 (9)−0.0036 (8)−0.0020 (8)
C40.0187 (10)0.0193 (10)0.0218 (11)−0.0018 (8)−0.0001 (8)0.0014 (8)
C50.0157 (10)0.0209 (10)0.0145 (9)0.0054 (8)0.0026 (8)0.0043 (8)
C60.0193 (10)0.0176 (10)0.0157 (10)0.0033 (8)0.0002 (8)0.0007 (8)
C70.0193 (11)0.0242 (11)0.0199 (10)0.0020 (8)0.0046 (8)0.0055 (8)
C80.0185 (11)0.0198 (10)0.0259 (11)−0.0031 (8)0.0035 (8)0.0021 (8)
O40.0144 (8)0.0516 (10)0.0228 (8)0.0064 (7)0.0038 (6)−0.0003 (7)
N10.0172 (9)0.0279 (9)0.0153 (9)0.0046 (7)0.0035 (7)−0.0030 (7)
N20.0171 (9)0.0194 (8)0.0148 (8)0.0031 (7)0.0012 (6)0.0027 (6)
C90.0178 (11)0.0255 (11)0.0168 (10)0.0055 (8)0.0018 (8)0.0042 (8)
C100.0144 (10)0.0210 (10)0.0156 (10)0.0038 (8)−0.0008 (7)0.0030 (8)
C110.0149 (10)0.0240 (10)0.0221 (10)0.0003 (8)0.0020 (8)0.0058 (8)
C120.0227 (11)0.0180 (10)0.0234 (11)−0.0030 (8)−0.0011 (8)−0.0002 (8)
C130.0217 (11)0.0192 (10)0.0160 (10)0.0031 (8)0.0002 (8)0.0001 (8)
C140.0157 (10)0.0162 (9)0.0161 (10)0.0009 (7)−0.0013 (8)0.0012 (7)
O1—C11.197 (3)C8—H8B0.9800
O2—C51.343 (2)C8—H8C0.9800
O2—H20.854 (16)O4—C91.236 (2)
O3—C61.365 (2)N1—C91.330 (3)
O3—C81.435 (2)N1—H1A0.868 (16)
C1—C21.474 (3)N1—H1B0.869 (16)
C1—H10.9500N2—C131.336 (2)
C2—C31.391 (3)N2—C141.338 (2)
C2—C71.396 (3)C9—C101.500 (3)
C3—C41.384 (3)C10—C141.388 (3)
C3—H30.9500C10—C111.392 (3)
C4—C51.391 (3)C11—C121.384 (3)
C4—H40.9500C11—H110.9500
C5—C61.410 (3)C12—C131.384 (3)
C6—C71.375 (3)C12—H120.9500
C7—H70.9500C13—H130.9500
C8—H8A0.9800C14—H140.9500
C5—O2—H2112.6 (16)O3—C8—H8C109.5
C6—O3—C8117.44 (15)H8A—C8—H8C109.5
O1—C1—C2126.2 (2)H8B—C8—H8C109.5
O1—C1—H1116.9C9—N1—H1A121.6 (15)
C2—C1—H1116.9C9—N1—H1B117.5 (15)
C3—C2—C7119.56 (18)H1A—N1—H1B120 (2)
C3—C2—C1122.83 (19)C13—N2—C14117.72 (17)
C7—C2—C1117.59 (19)O4—C9—N1123.82 (19)
C4—C3—C2119.93 (19)O4—C9—C10119.84 (18)
C4—C3—H3120.0N1—C9—C10116.34 (17)
C2—C3—H3120.0C14—C10—C11118.15 (18)
C3—C4—C5120.68 (18)C14—C10—C9121.73 (18)
C3—C4—H4119.7C11—C10—C9120.07 (18)
C5—C4—H4119.7C12—C11—C10118.88 (18)
O2—C5—C4124.72 (18)C12—C11—H11120.6
O2—C5—C6115.90 (17)C10—C11—H11120.6
C4—C5—C6119.38 (18)C13—C12—C11118.77 (19)
O3—C6—C7125.62 (18)C13—C12—H12120.6
O3—C6—C5114.82 (17)C11—C12—H12120.6
C7—C6—C5119.56 (18)N2—C13—C12123.12 (18)
C6—C7—C2120.88 (19)N2—C13—H13118.4
C6—C7—H7119.6C12—C13—H13118.4
C2—C7—H7119.6N2—C14—C10123.34 (18)
O3—C8—H8A109.5N2—C14—H14118.3
O3—C8—H8B109.5C10—C14—H14118.3
H8A—C8—H8B109.5
D—H···AD—HH···AD···AD—H···A
N1—H1A···O4i0.87 (2)2.05 (2)2.900 (2)167 (2)
N1—H1B···O2ii0.87 (2)2.42 (2)3.085 (2)134.(2)
N1—H1B···O3ii0.87 (2)2.20 (2)3.019 (2)156 (2)
O2—H2···N2iii0.85 (2)1.80 (2)2.634 (2)164 (2)
C8—H8A···O1iv0.982.593.381 (3)137.
C8—H8C···O2i0.982.553.337 (2)138.
C13—H13···O1v0.952.493.185 (3)130.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O4i0.87 (2)2.05 (2)2.900 (2)167 (2)
N1—H1B⋯O2ii0.87 (2)2.42 (2)3.085 (2)134 (2)
N1—H1B⋯O3ii0.87 (2)2.20 (2)3.019 (2)156 (2)
O2—H2⋯N2iii0.85 (2)1.80 (2)2.634 (2)164 (2)
C8—H8A⋯O1iv0.982.593.381 (3)137
C8—H8C⋯O2i0.982.553.337 (2)138
C13—H13⋯O1v0.952.493.185 (3)130

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  3 in total

1.  New polymorphs of isonicotinamide and nicotinamide.

Authors:  Jinjing Li; Susan A Bourne; Mino R Caira
Journal:  Chem Commun (Camb)       Date:  2010-11-19       Impact factor: 6.222

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Experimental charge density and electrostatic potential in nicotinamide.

Authors: 
Journal:  Acta Crystallogr B       Date:  1999-02-01
  3 in total

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