| Literature DB >> 22199692 |
Fiona N-F How, M S Amalina, Hamid Khaledi, Hapipah Mohd Ali.
Abstract
In the title compound, C(6)H(6)N(2)O·C(8)H(8)O(3), an equimolar co-crystal of nicotinamide and vanillin, the aromatic ring and the amide fragment of the nicotinamide mol-ecule make a dihedral angle of 32.6 (2)°. The vanillin mol-ecule is almost planar, with an r.m.s. deviation for all non-H atoms of 0.0094 Å. The vaniline and nicotinamide aromatic rings are nearly coplanar, the dihedral angle between them being 3.20 (9)°. In the crystal, the two components are linked through N-H⋯O and O-H⋯N hydrogen bonds into chains along the a axis. The chains are connected via C-H⋯O inter-actions, forming a three-dimensional polymeric structure.Entities:
Year: 2011 PMID: 22199692 PMCID: PMC3238839 DOI: 10.1107/S1600536811045648
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H6N2O·C8H8O3 | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 1226 reflections | |
| θ = 2.6–29.7° | |
| µ = 0.11 mm−1 | |
| α = 98.108 (1)° | |
| β = 92.810 (2)° | Lath, colorless |
| γ = 94.784 (2)° | 0.22 × 0.14 × 0.04 mm |
| Bruker APEXII CCD diffractometer | 2243 independent reflections |
| Radiation source: fine-focus sealed tube | 1862 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.3°, θmin = 2.4° |
| Absorption correction: multi-scan ( | |
| 3432 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2243 reflections | (Δ/σ)max < 0.001 |
| 191 parameters | Δρmax = 0.66 e Å−3 |
| 4 restraints | Δρmin = −0.28 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.3651 (3) | 0.83011 (19) | 0.61085 (10) | 0.0359 (4) | |
| O2 | 0.8107 (3) | 0.63328 (16) | 0.23075 (9) | 0.0195 (3) | |
| H2 | 0.949 (4) | 0.698 (2) | 0.2250 (15) | 0.029* | |
| O3 | 0.4028 (3) | 0.44026 (16) | 0.25734 (9) | 0.0218 (3) | |
| C1 | 0.3070 (5) | 0.7306 (3) | 0.54863 (14) | 0.0286 (5) | |
| H1 | 0.1529 | 0.6570 | 0.5522 | 0.034* | |
| C2 | 0.4516 (4) | 0.7113 (2) | 0.46701 (13) | 0.0210 (4) | |
| C3 | 0.6726 (4) | 0.8148 (2) | 0.45164 (13) | 0.0221 (5) | |
| H3 | 0.7380 | 0.9016 | 0.4951 | 0.026* | |
| C4 | 0.7972 (4) | 0.7912 (2) | 0.37307 (13) | 0.0204 (4) | |
| H4 | 0.9482 | 0.8620 | 0.3629 | 0.024* | |
| C5 | 0.7035 (4) | 0.6648 (2) | 0.30888 (12) | 0.0166 (4) | |
| C6 | 0.4793 (4) | 0.5600 (2) | 0.32443 (12) | 0.0176 (4) | |
| C7 | 0.3561 (4) | 0.5847 (2) | 0.40255 (13) | 0.0208 (5) | |
| H7 | 0.2040 | 0.5146 | 0.4128 | 0.025* | |
| C8 | 0.1709 (4) | 0.3323 (2) | 0.26827 (14) | 0.0217 (5) | |
| H8A | 0.2110 | 0.2765 | 0.3179 | 0.033* | |
| H8B | 0.1328 | 0.2551 | 0.2150 | 0.033* | |
| H8C | 0.0103 | 0.3917 | 0.2793 | 0.033* | |
| O4 | 0.8254 (3) | 0.71964 (19) | −0.04761 (9) | 0.0299 (4) | |
| N1 | 0.3766 (4) | 0.6341 (2) | −0.07875 (11) | 0.0205 (4) | |
| H1A | 0.207 (3) | 0.645 (3) | −0.0672 (14) | 0.025* | |
| H1B | 0.415 (4) | 0.586 (2) | −0.1293 (11) | 0.025* | |
| N2 | 0.2385 (3) | 0.80224 (19) | 0.18395 (10) | 0.0170 (4) | |
| C9 | 0.5840 (4) | 0.7129 (2) | −0.02755 (13) | 0.0197 (4) | |
| C10 | 0.5123 (4) | 0.7959 (2) | 0.05932 (12) | 0.0169 (4) | |
| C11 | 0.6653 (4) | 0.9350 (2) | 0.09779 (13) | 0.0201 (4) | |
| H11 | 0.8121 | 0.9801 | 0.0687 | 0.024* | |
| C12 | 0.5998 (4) | 1.0066 (2) | 0.17913 (13) | 0.0220 (5) | |
| H12 | 0.6997 | 1.1023 | 0.2066 | 0.026* | |
| C13 | 0.3864 (4) | 0.9363 (2) | 0.21971 (13) | 0.0192 (4) | |
| H13 | 0.3429 | 0.9856 | 0.2757 | 0.023* | |
| C14 | 0.3015 (4) | 0.7346 (2) | 0.10499 (12) | 0.0162 (4) | |
| H14 | 0.1966 | 0.6397 | 0.0788 | 0.019* |
| O1 | 0.0440 (10) | 0.0363 (9) | 0.0266 (9) | 0.0056 (8) | 0.0038 (7) | 0.0006 (7) |
| O2 | 0.0182 (8) | 0.0217 (7) | 0.0174 (7) | −0.0031 (6) | 0.0053 (6) | 0.0004 (6) |
| O3 | 0.0223 (8) | 0.0214 (7) | 0.0198 (7) | −0.0045 (6) | 0.0064 (6) | −0.0016 (6) |
| C1 | 0.0356 (13) | 0.0308 (12) | 0.0189 (10) | 0.0104 (10) | −0.0028 (9) | −0.0012 (9) |
| C2 | 0.0226 (11) | 0.0246 (11) | 0.0170 (10) | 0.0074 (8) | 0.0004 (8) | 0.0045 (8) |
| C3 | 0.0270 (11) | 0.0214 (10) | 0.0165 (10) | 0.0060 (9) | −0.0036 (8) | −0.0020 (8) |
| C4 | 0.0187 (10) | 0.0193 (10) | 0.0218 (11) | −0.0018 (8) | −0.0001 (8) | 0.0014 (8) |
| C5 | 0.0157 (10) | 0.0209 (10) | 0.0145 (9) | 0.0054 (8) | 0.0026 (8) | 0.0043 (8) |
| C6 | 0.0193 (10) | 0.0176 (10) | 0.0157 (10) | 0.0033 (8) | 0.0002 (8) | 0.0007 (8) |
| C7 | 0.0193 (11) | 0.0242 (11) | 0.0199 (10) | 0.0020 (8) | 0.0046 (8) | 0.0055 (8) |
| C8 | 0.0185 (11) | 0.0198 (10) | 0.0259 (11) | −0.0031 (8) | 0.0035 (8) | 0.0021 (8) |
| O4 | 0.0144 (8) | 0.0516 (10) | 0.0228 (8) | 0.0064 (7) | 0.0038 (6) | −0.0003 (7) |
| N1 | 0.0172 (9) | 0.0279 (9) | 0.0153 (9) | 0.0046 (7) | 0.0035 (7) | −0.0030 (7) |
| N2 | 0.0171 (9) | 0.0194 (8) | 0.0148 (8) | 0.0031 (7) | 0.0012 (6) | 0.0027 (6) |
| C9 | 0.0178 (11) | 0.0255 (11) | 0.0168 (10) | 0.0055 (8) | 0.0018 (8) | 0.0042 (8) |
| C10 | 0.0144 (10) | 0.0210 (10) | 0.0156 (10) | 0.0038 (8) | −0.0008 (7) | 0.0030 (8) |
| C11 | 0.0149 (10) | 0.0240 (10) | 0.0221 (10) | 0.0003 (8) | 0.0020 (8) | 0.0058 (8) |
| C12 | 0.0227 (11) | 0.0180 (10) | 0.0234 (11) | −0.0030 (8) | −0.0011 (8) | −0.0002 (8) |
| C13 | 0.0217 (11) | 0.0192 (10) | 0.0160 (10) | 0.0031 (8) | 0.0002 (8) | 0.0001 (8) |
| C14 | 0.0157 (10) | 0.0162 (9) | 0.0161 (10) | 0.0009 (7) | −0.0013 (8) | 0.0012 (7) |
| O1—C1 | 1.197 (3) | C8—H8B | 0.9800 |
| O2—C5 | 1.343 (2) | C8—H8C | 0.9800 |
| O2—H2 | 0.854 (16) | O4—C9 | 1.236 (2) |
| O3—C6 | 1.365 (2) | N1—C9 | 1.330 (3) |
| O3—C8 | 1.435 (2) | N1—H1A | 0.868 (16) |
| C1—C2 | 1.474 (3) | N1—H1B | 0.869 (16) |
| C1—H1 | 0.9500 | N2—C13 | 1.336 (2) |
| C2—C3 | 1.391 (3) | N2—C14 | 1.338 (2) |
| C2—C7 | 1.396 (3) | C9—C10 | 1.500 (3) |
| C3—C4 | 1.384 (3) | C10—C14 | 1.388 (3) |
| C3—H3 | 0.9500 | C10—C11 | 1.392 (3) |
| C4—C5 | 1.391 (3) | C11—C12 | 1.384 (3) |
| C4—H4 | 0.9500 | C11—H11 | 0.9500 |
| C5—C6 | 1.410 (3) | C12—C13 | 1.384 (3) |
| C6—C7 | 1.375 (3) | C12—H12 | 0.9500 |
| C7—H7 | 0.9500 | C13—H13 | 0.9500 |
| C8—H8A | 0.9800 | C14—H14 | 0.9500 |
| C5—O2—H2 | 112.6 (16) | O3—C8—H8C | 109.5 |
| C6—O3—C8 | 117.44 (15) | H8A—C8—H8C | 109.5 |
| O1—C1—C2 | 126.2 (2) | H8B—C8—H8C | 109.5 |
| O1—C1—H1 | 116.9 | C9—N1—H1A | 121.6 (15) |
| C2—C1—H1 | 116.9 | C9—N1—H1B | 117.5 (15) |
| C3—C2—C7 | 119.56 (18) | H1A—N1—H1B | 120 (2) |
| C3—C2—C1 | 122.83 (19) | C13—N2—C14 | 117.72 (17) |
| C7—C2—C1 | 117.59 (19) | O4—C9—N1 | 123.82 (19) |
| C4—C3—C2 | 119.93 (19) | O4—C9—C10 | 119.84 (18) |
| C4—C3—H3 | 120.0 | N1—C9—C10 | 116.34 (17) |
| C2—C3—H3 | 120.0 | C14—C10—C11 | 118.15 (18) |
| C3—C4—C5 | 120.68 (18) | C14—C10—C9 | 121.73 (18) |
| C3—C4—H4 | 119.7 | C11—C10—C9 | 120.07 (18) |
| C5—C4—H4 | 119.7 | C12—C11—C10 | 118.88 (18) |
| O2—C5—C4 | 124.72 (18) | C12—C11—H11 | 120.6 |
| O2—C5—C6 | 115.90 (17) | C10—C11—H11 | 120.6 |
| C4—C5—C6 | 119.38 (18) | C13—C12—C11 | 118.77 (19) |
| O3—C6—C7 | 125.62 (18) | C13—C12—H12 | 120.6 |
| O3—C6—C5 | 114.82 (17) | C11—C12—H12 | 120.6 |
| C7—C6—C5 | 119.56 (18) | N2—C13—C12 | 123.12 (18) |
| C6—C7—C2 | 120.88 (19) | N2—C13—H13 | 118.4 |
| C6—C7—H7 | 119.6 | C12—C13—H13 | 118.4 |
| C2—C7—H7 | 119.6 | N2—C14—C10 | 123.34 (18) |
| O3—C8—H8A | 109.5 | N2—C14—H14 | 118.3 |
| O3—C8—H8B | 109.5 | C10—C14—H14 | 118.3 |
| H8A—C8—H8B | 109.5 |
| H··· | ||||
| N1—H1A···O4i | 0.87 (2) | 2.05 (2) | 2.900 (2) | 167 (2) |
| N1—H1B···O2ii | 0.87 (2) | 2.42 (2) | 3.085 (2) | 134.(2) |
| N1—H1B···O3ii | 0.87 (2) | 2.20 (2) | 3.019 (2) | 156 (2) |
| O2—H2···N2iii | 0.85 (2) | 1.80 (2) | 2.634 (2) | 164 (2) |
| C8—H8A···O1iv | 0.98 | 2.59 | 3.381 (3) | 137. |
| C8—H8C···O2i | 0.98 | 2.55 | 3.337 (2) | 138. |
| C13—H13···O1v | 0.95 | 2.49 | 3.185 (3) | 130. |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.87 (2) | 2.05 (2) | 2.900 (2) | 167 (2) |
| N1—H1 | 0.87 (2) | 2.42 (2) | 3.085 (2) | 134 (2) |
| N1—H1 | 0.87 (2) | 2.20 (2) | 3.019 (2) | 156 (2) |
| O2—H2⋯N2iii | 0.85 (2) | 1.80 (2) | 2.634 (2) | 164 (2) |
| C8—H8 | 0.98 | 2.59 | 3.381 (3) | 137 |
| C8—H8 | 0.98 | 2.55 | 3.337 (2) | 138 |
| C13—H13⋯O1v | 0.95 | 2.49 | 3.185 (3) | 130 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .