Literature DB >> 22199677

6-[(4-Hy-droxy-phen-yl)diazenyl]-1,10-phenanthrolin-1-ium chloride monohydrate.

Akram Hazeen1, Yan Zhang, Minchong Mao, Kraig A Wheeler, Mark E McGuire.   

Abstract

In the cation of the title mol-ecular salt, C(18)H(13)N(4)O(+)·Cl(-)·H(2)O, the dihedral angle between the mean planes of the 1,10-phenanthroline system and the phenol ring is 14.40 (19)°. The crystal packing is stabilized by O-H⋯O hydrogen bonds, weak N-H⋯Cl and O-H⋯Cl inter-molecular inter-actions and π-π stacking inter-actions [centroid-centroid distance = 3.6944 (13) and 3.9702 (12) Å].

Entities:  

Year:  2011        PMID: 22199677      PMCID: PMC3238824          DOI: 10.1107/S1600536811044941

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For Ru(II)–polypyridyl complexes as solar energy conversion catalysts, see: Vos & Kelly (2006 ▶). For strongly absorbing Ru(II) complexes containing azo-dye ligands, see: McGuire et al. (1998 ▶); Malinowski & McGuire (2003 ▶); For the pKa of the phenol portion of these complexes, see: Zhang (1999 ▶). For the synthesis and characterization of 1,10-phenanthroline­azo­sulfonamide derivatives and their ternary Ni(II) complexes, see: Aly et al. (2006 ▶). For the synthesis of 5-nitro-1,10-phenanthroline, see: Amouyal et al. (1990 ▶) and of 5-amino-1,10-phenanthroline, see: Nasielski-Hinkens et al. (1981 ▶). For the crystal structure of 4-[(E)-1-naphthyl­diazen­yl]phenol, see: Aslanov et al. (2009 ▶) and of 2-pyridyl-diazo-1,3 phenol, see: Xu et al. (1982 ▶).

Experimental

Crystal data

C18H13N4O+·Cl−·H2O M = 354.79 Triclinic, a = 7.6732 (4) Å b = 7.7894 (4) Å c = 14.1225 (7) Å α = 78.535 (3)° β = 80.379 (3)° γ = 78.212 (3)° V = 802.73 (7) Å3 Z = 2 Cu Kα radiation μ = 2.28 mm−1 T = 100 K 0.41 × 0.26 × 0.04 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.454, T max = 0.914 15401 measured reflections 2806 independent reflections 2407 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.118 S = 1.03 2806 reflections 242 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.40 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811044941/jj2106sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811044941/jj2106Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811044941/jj2106Isup3.mol Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H13N4O+·Cl·H2OZ = 2
Mr = 354.79F(000) = 368
Triclinic, P1Dx = 1.468 Mg m3
Hall symbol: -P 1Cu Kα radiation, λ = 1.54178 Å
a = 7.6732 (4) ÅCell parameters from 4384 reflections
b = 7.7894 (4) Åθ = 3.2–66.7°
c = 14.1225 (7) ŵ = 2.28 mm1
α = 78.535 (3)°T = 100 K
β = 80.379 (3)°Transparent plate, orange
γ = 78.212 (3)°0.41 × 0.26 × 0.04 mm
V = 802.73 (7) Å3
Bruker APEXII CCD diffractometer2806 independent reflections
Radiation source: fine-focus sealed tube2407 reflections with I > 2σ(I)
graphiteRint = 0.051
Detector resolution: 8.33 pixels mm-1θmax = 67.4°, θmin = 3.2°
phi and ω scansh = −9→9
Absorption correction: multi-scan (SADABS; Bruker, 2008)k = −7→9
Tmin = 0.454, Tmax = 0.914l = −16→16
15401 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.118H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0805P)2 + 0.1676P] where P = (Fo2 + 2Fc2)/3
2806 reflections(Δ/σ)max < 0.001
242 parametersΔρmax = 0.40 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.24720 (6)0.24063 (6)0.05019 (3)0.02974 (18)
O10.8362 (2)1.58116 (19)−0.72107 (11)0.0356 (4)
O20.0147 (2)0.5892 (2)0.10617 (11)0.0319 (4)
N10.3212 (2)0.6808 (2)−0.09907 (12)0.0286 (4)
N20.5247 (2)0.3608 (2)−0.12489 (13)0.0278 (4)
N30.6421 (2)0.9679 (2)−0.39335 (12)0.0289 (4)
N40.7403 (2)0.9508 (2)−0.47300 (12)0.0288 (4)
C10.2241 (3)0.8387 (3)−0.08742 (15)0.0301 (5)
H10.13530.8451−0.03200.036*
C20.2451 (3)0.9963 (3)−0.15216 (16)0.0307 (5)
H20.17161.1059−0.14050.037*
C30.3723 (3)0.9915 (3)−0.23242 (15)0.0289 (5)
H30.38781.0975−0.27710.035*
C40.4799 (3)0.8273 (3)−0.24789 (14)0.0265 (4)
C50.6165 (3)0.8060 (3)−0.33052 (14)0.0272 (4)
C60.7152 (3)0.6433 (3)−0.34203 (15)0.0281 (4)
H60.80430.6327−0.39700.034*
C70.6860 (3)0.4882 (3)−0.27224 (15)0.0277 (4)
C80.7851 (3)0.3169 (3)−0.27964 (15)0.0302 (5)
H80.87550.3004−0.33350.036*
C90.7517 (3)0.1734 (3)−0.20927 (16)0.0314 (5)
H90.81940.0580−0.21390.038*
C100.6177 (3)0.1993 (3)−0.13131 (15)0.0298 (5)
H100.59280.1010−0.08260.036*
C110.5531 (3)0.5072 (3)−0.19183 (14)0.0263 (4)
C120.4470 (3)0.6768 (3)−0.17871 (14)0.0258 (4)
C130.7674 (3)1.1138 (3)−0.53279 (15)0.0273 (4)
C140.6952 (3)1.2806 (3)−0.50623 (16)0.0337 (5)
H140.62671.2879−0.44410.040*
C150.7232 (3)1.4333 (3)−0.56975 (16)0.0344 (5)
H150.67581.5458−0.55080.041*
C160.8206 (3)1.4250 (3)−0.66197 (15)0.0302 (5)
C170.8979 (3)1.2599 (3)−0.68827 (15)0.0283 (4)
H170.96821.2527−0.74990.034*
C180.8705 (3)1.1070 (3)−0.62302 (15)0.0284 (4)
H180.92360.9943−0.64050.034*
H40.902 (4)1.565 (4)−0.783 (2)0.052 (8)*
H190.442 (4)0.377 (3)−0.076 (2)0.045 (7)*
H200.077 (4)0.494 (4)0.091 (2)0.054 (8)*
H21−0.055 (4)0.622 (4)0.062 (2)0.050 (8)*
U11U22U33U12U13U23
Cl10.0299 (3)0.0235 (3)0.0305 (3)0.00016 (18)−0.00177 (19)0.00097 (18)
O10.0425 (9)0.0243 (8)0.0323 (8)−0.0014 (6)0.0041 (7)0.0007 (6)
O20.0383 (9)0.0256 (8)0.0288 (8)0.0005 (6)−0.0038 (7)−0.0041 (6)
N10.0299 (9)0.0255 (9)0.0280 (9)−0.0050 (7)−0.0016 (7)−0.0011 (7)
N20.0282 (9)0.0249 (9)0.0272 (9)−0.0021 (7)−0.0023 (7)−0.0013 (7)
N30.0283 (9)0.0280 (9)0.0276 (9)−0.0033 (7)−0.0025 (7)−0.0010 (7)
N40.0277 (9)0.0292 (10)0.0262 (9)−0.0026 (7)−0.0035 (7)0.0005 (7)
C10.0291 (11)0.0284 (11)0.0298 (11)−0.0026 (8)0.0014 (8)−0.0049 (8)
C20.0345 (11)0.0226 (11)0.0330 (11)−0.0016 (8)−0.0031 (9)−0.0048 (8)
C30.0324 (11)0.0233 (11)0.0298 (11)−0.0056 (8)−0.0043 (8)−0.0011 (8)
C40.0256 (10)0.0268 (11)0.0268 (10)−0.0040 (8)−0.0065 (8)−0.0017 (8)
C50.0279 (10)0.0253 (11)0.0267 (10)−0.0035 (8)−0.0067 (8)0.0005 (8)
C60.0268 (10)0.0307 (11)0.0251 (10)−0.0040 (8)−0.0005 (8)−0.0040 (8)
C70.0261 (10)0.0264 (11)0.0290 (11)−0.0014 (8)−0.0049 (8)−0.0034 (8)
C80.0286 (11)0.0291 (11)0.0309 (11)−0.0008 (8)−0.0024 (8)−0.0059 (8)
C90.0321 (11)0.0235 (11)0.0358 (11)−0.0001 (8)−0.0045 (9)−0.0033 (8)
C100.0321 (11)0.0215 (11)0.0337 (11)−0.0022 (8)−0.0067 (9)−0.0002 (8)
C110.0277 (10)0.0236 (10)0.0274 (10)−0.0047 (8)−0.0067 (8)−0.0014 (8)
C120.0254 (10)0.0246 (11)0.0269 (10)−0.0032 (8)−0.0049 (8)−0.0032 (8)
C130.0258 (10)0.0268 (11)0.0271 (10)−0.0022 (8)−0.0054 (8)−0.0001 (8)
C140.0363 (12)0.0315 (12)0.0280 (11)−0.0025 (9)0.0030 (9)−0.0026 (9)
C150.0403 (12)0.0244 (11)0.0334 (12)−0.0009 (9)0.0024 (9)−0.0040 (8)
C160.0306 (11)0.0268 (11)0.0300 (11)−0.0031 (8)−0.0046 (8)0.0013 (8)
C170.0274 (10)0.0286 (11)0.0267 (10)−0.0024 (8)−0.0023 (8)−0.0029 (8)
C180.0281 (10)0.0266 (11)0.0276 (10)0.0007 (8)−0.0053 (8)−0.0025 (8)
O1—C161.347 (2)C6—C71.430 (3)
O1—H40.95 (3)C6—H60.9500
O2—H200.84 (3)C7—C111.404 (3)
O2—H210.85 (3)C7—C81.408 (3)
N1—C11.327 (3)C8—C91.376 (3)
N1—C121.355 (3)C8—H80.9500
N2—C101.326 (3)C9—C101.391 (3)
N2—C111.358 (3)C9—H90.9500
N2—H190.87 (3)C10—H100.9500
N3—N41.259 (2)C11—C121.432 (3)
N3—C51.419 (3)C13—C181.388 (3)
N4—C131.411 (3)C13—C141.402 (3)
C1—C21.398 (3)C14—C151.372 (3)
C1—H10.9500C14—H140.9500
C2—C31.368 (3)C15—C161.396 (3)
C2—H20.9500C15—H150.9500
C3—C41.409 (3)C16—C171.395 (3)
C3—H30.9500C17—C181.384 (3)
C4—C121.405 (3)C17—H170.9500
C4—C51.444 (3)C18—H180.9500
C5—C61.362 (3)
C16—O1—H4112.0 (17)C7—C8—H8119.8
H20—O2—H21103 (3)C8—C9—C10119.17 (19)
C1—N1—C12116.57 (17)C8—C9—H9120.4
C10—N2—C11123.09 (19)C10—C9—H9120.4
C10—N2—H19120.1 (18)N2—C10—C9120.14 (19)
C11—N2—H19116.8 (18)N2—C10—H10119.9
N4—N3—C5115.16 (16)C9—C10—H10119.9
N3—N4—C13113.91 (16)N2—C11—C7119.06 (18)
N1—C1—C2123.65 (19)N2—C11—C12119.30 (18)
N1—C1—H1118.2C7—C11—C12121.64 (18)
C2—C1—H1118.2N1—C12—C4124.37 (18)
C3—C2—C1119.52 (18)N1—C12—C11117.06 (17)
C3—C2—H2120.2C4—C12—C11118.57 (18)
C1—C2—H2120.2C18—C13—C14118.72 (19)
C2—C3—C4119.12 (18)C18—C13—N4117.59 (18)
C2—C3—H3120.4C14—C13—N4123.69 (18)
C4—C3—H3120.4C15—C14—C13120.14 (19)
C12—C4—C3116.77 (18)C15—C14—H14119.9
C12—C4—C5119.30 (17)C13—C14—H14119.9
C3—C4—C5123.92 (18)C14—C15—C16120.64 (19)
C6—C5—N3124.55 (18)C14—C15—H15119.7
C6—C5—C4121.23 (18)C16—C15—H15119.7
N3—C5—C4114.16 (17)O1—C16—C17123.39 (19)
C5—C6—C7120.71 (19)O1—C16—C15116.79 (18)
C5—C6—H6119.6C17—C16—C15119.82 (19)
C7—C6—H6119.6C18—C17—C16118.89 (19)
C11—C7—C8118.16 (19)C18—C17—H17120.6
C11—C7—C6118.55 (18)C16—C17—H17120.6
C8—C7—C6123.28 (19)C17—C18—C13121.70 (18)
C9—C8—C7120.38 (19)C17—C18—H18119.2
C9—C8—H8119.8C13—C18—H18119.2
C5—N3—N4—C13−178.33 (16)C8—C7—C11—C12179.75 (18)
C12—N1—C1—C20.2 (3)C6—C7—C11—C120.2 (3)
N1—C1—C2—C3−0.2 (3)C1—N1—C12—C40.2 (3)
C1—C2—C3—C4−0.2 (3)C1—N1—C12—C11179.76 (18)
C2—C3—C4—C120.6 (3)C3—C4—C12—N1−0.6 (3)
C2—C3—C4—C5179.22 (19)C5—C4—C12—N1−179.33 (18)
N4—N3—C5—C613.2 (3)C3—C4—C12—C11179.85 (18)
N4—N3—C5—C4−169.79 (17)C5—C4—C12—C111.1 (3)
C12—C4—C5—C6−0.7 (3)N2—C11—C12—N1−0.5 (3)
C3—C4—C5—C6−179.33 (19)C7—C11—C12—N1179.51 (18)
C12—C4—C5—N3−177.80 (17)N2—C11—C12—C4179.09 (17)
C3—C4—C5—N33.6 (3)C7—C11—C12—C4−0.9 (3)
N3—C5—C6—C7176.79 (18)N3—N4—C13—C18−178.43 (17)
C4—C5—C6—C70.0 (3)N3—N4—C13—C141.1 (3)
C5—C6—C7—C110.2 (3)C18—C13—C14—C151.5 (3)
C5—C6—C7—C8−179.3 (2)N4—C13—C14—C15−178.00 (19)
C11—C7—C8—C9−0.3 (3)C13—C14—C15—C161.2 (3)
C6—C7—C8—C9179.22 (19)C14—C15—C16—O1177.6 (2)
C7—C8—C9—C100.7 (3)C14—C15—C16—C17−3.1 (3)
C11—N2—C10—C90.0 (3)O1—C16—C17—C18−178.53 (18)
C8—C9—C10—N2−0.5 (3)C15—C16—C17—C182.3 (3)
C10—N2—C11—C70.4 (3)C16—C17—C18—C130.5 (3)
C10—N2—C11—C12−179.60 (18)C14—C13—C18—C17−2.4 (3)
C8—C7—C11—N2−0.3 (3)N4—C13—C18—C17177.18 (17)
C6—C7—C11—N2−179.78 (17)
D—H···AD—HH···AD···AD—H···A
O1—H4···O2i0.95 (3)1.65 (3)2.586 (2)166 (3)
N2—H19···Cl10.87 (3)2.35 (3)3.1077 (19)145 (2)
O2—H20···Cl10.84 (3)2.25 (3)3.0959 (16)180 (3)
O2—H21···Cl1ii0.85 (3)2.30 (3)3.1467 (17)170 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H4⋯O2i0.95 (3)1.65 (3)2.586 (2)166 (3)
N2—H19⋯Cl10.87 (3)2.35 (3)3.1077 (19)145 (2)
O2—H20⋯Cl10.84 (3)2.25 (3)3.0959 (16)180 (3)
O2—H21⋯Cl1ii0.85 (3)2.30 (3)3.1467 (17)170 (2)

Symmetry codes: (i) ; (ii) .

  3 in total

1.  Ruthenium polypyridyl chemistry; from basic research to applications and back again.

Authors:  Johannes G Vos; John M Kelly
Journal:  Dalton Trans       Date:  2006-09-21       Impact factor: 4.390

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  4-[(E)-1-Naphthyl-diazen-yl]phenol.

Authors:  Leonid A Aslanov; Ksenia A Paseshnichenko; Alexandr V Yatsenko
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-25
  3 in total

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