Literature DB >> 22199643

(1,2,3,4-Tetra-hydro-isoquinoline-2-carbo-dithio-ato-κS,S')(thio-cyanato-κN)(tri-phenyl-phosphane)nickel(II).

P Valarmathi, S Thirumaran, S Selvanayagam.   

Abstract

The Ni(II) atom in the mononuclear title compound, [Ni(C(10)H(10)NS(2))(NCS)(C(18)H(15)P)], exists within a S(2)PN donor set that defines a distorted square-planar geometry. A significant asymmetry in the Ni-S bond lengths support the less effective trans effect of SCN(-) over PPh(3).

Entities:  

Year:  2011        PMID: 22199643      PMCID: PMC3238766          DOI: 10.1107/S1600536811050550

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to dithio­carbamates and their bio­logical activity, see: Gunay et al. (1999 ▶); Hogarth (2005 ▶); Ozkirimli et al. (2005 ▶). Nickel complexes of phosphine ligands have been studied for their anti­cancer activity, see: Jarret et al. (1993 ▶). Nickel(II) dithio­carbamates can react with Lewis bases such as phosphines as well as hard bases such as nitro­genous ligands, see: Srinivasan et al. (2009 ▶); Travnicek et al. (2008 ▶). For the preparation of the title compound, see: Valarmathi et al. (2011 ▶).

Experimental

Crystal data

[Ni(C10H10NS2)(NCS)(C18H15P)] M = 587.37 Monoclinic, a = 13.7981 (4) Å b = 13.1429 (4) Å c = 14.9447 (4) Å β = 91.693 (2)° V = 2708.99 (13) Å3 Z = 4 Mo Kα radiation μ = 1.03 mm−1 T = 292 K 0.25 × 0.20 × 0.15 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker 1999 ▶) T min = 0.783, T max = 0.861 33862 measured reflections 7287 independent reflections 5132 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.123 S = 1.03 7287 reflections 325 parameters H-atom parameters constrained Δρmax = 0.55 e Å−3 Δρmin = −0.30 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97 and PLATON. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811050550/bt5724sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811050550/bt5724Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C10H10NS2)(NCS)(C18H15P)]F(000) = 1216
Mr = 587.37Dx = 1.440 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 8723 reflections
a = 13.7981 (4) Åθ = 2.5–26.3°
b = 13.1429 (4) ŵ = 1.03 mm1
c = 14.9447 (4) ÅT = 292 K
β = 91.693 (2)°Block, pale-yellow
V = 2708.99 (13) Å30.25 × 0.20 × 0.15 mm
Z = 4
Bruker KAPPA APEXII CCD diffractometer7287 independent reflections
Radiation source: fine-focus sealed tube5132 reflections with I > 2σ(I)
graphiteRint = 0.035
ω and φ scanθmax = 29.2°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker 1999)h = −18→17
Tmin = 0.783, Tmax = 0.861k = −11→17
33862 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.123H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0574P)2 + 1.2033P] where P = (Fo2 + 2Fc2)/3
7287 reflections(Δ/σ)max = 0.001
325 parametersΔρmax = 0.55 e Å3
0 restraintsΔρmin = −0.30 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.67037 (18)0.52602 (19)0.77990 (18)0.0474 (6)
C20.70333 (19)0.61484 (19)0.43746 (18)0.0486 (6)
C30.5892 (3)0.5795 (3)0.3133 (2)0.0739 (9)
H3A0.55910.62950.27370.089*
H3B0.54480.56540.36090.089*
C40.6072 (3)0.4837 (3)0.2622 (3)0.0850 (11)
H4A0.62270.42890.30360.102*
H4B0.54900.46500.22800.102*
C50.6874 (2)0.4983 (3)0.2015 (2)0.0694 (9)
C60.6980 (4)0.4273 (3)0.1283 (3)0.0919 (12)
H60.65410.37400.12070.110*
C70.7711 (4)0.4377 (4)0.0712 (3)0.0969 (13)
H70.77730.39200.02420.116*
C80.8378 (3)0.5175 (4)0.0825 (3)0.0950 (13)
H80.88750.52490.04240.114*
C90.8305 (3)0.5845 (3)0.1519 (2)0.0777 (10)
H90.87550.63650.16020.093*
C100.7549 (2)0.5731 (2)0.20951 (19)0.0592 (7)
C110.7468 (3)0.6536 (3)0.2850 (2)0.0742 (9)
H11A0.81020.66440.31310.089*
H11B0.72500.71760.25930.089*
C121.00159 (18)0.65116 (18)0.63240 (16)0.0424 (5)
C130.9915 (2)0.7503 (2)0.60153 (18)0.0518 (6)
H130.93270.78380.60710.062*
C141.0679 (2)0.7995 (2)0.5627 (2)0.0631 (8)
H141.06080.86630.54300.076*
C151.1541 (2)0.7499 (3)0.5532 (2)0.0698 (9)
H151.20540.78270.52630.084*
C161.1653 (2)0.6520 (3)0.5833 (2)0.0707 (9)
H161.22400.61850.57650.085*
C171.0890 (2)0.6025 (2)0.6240 (2)0.0580 (7)
H171.09720.53660.64550.070*
C180.92192 (16)0.46836 (17)0.71702 (16)0.0401 (5)
C190.9523 (2)0.3997 (2)0.65279 (19)0.0526 (6)
H190.96520.42230.59540.063*
C200.9633 (2)0.2978 (2)0.6743 (2)0.0663 (8)
H200.98500.25250.63150.080*
C210.9426 (2)0.2629 (2)0.7583 (2)0.0632 (8)
H210.95080.19450.77250.076*
C220.9100 (2)0.3294 (2)0.8207 (2)0.0587 (7)
H220.89460.30560.87710.070*
C230.89970 (19)0.4318 (2)0.80110 (18)0.0492 (6)
H230.87780.47620.84450.059*
C240.89695 (17)0.67053 (17)0.79026 (15)0.0404 (5)
C250.9742 (2)0.6615 (2)0.85052 (18)0.0534 (6)
H251.02430.61650.83900.064*
C260.9775 (2)0.7188 (2)0.9275 (2)0.0671 (8)
H261.02900.71140.96850.080*
C270.9048 (3)0.7866 (2)0.9437 (2)0.0658 (8)
H270.90730.82540.99580.079*
C280.8290 (2)0.7977 (2)0.8845 (2)0.0619 (7)
H280.78030.84450.89580.074*
C290.82414 (19)0.7394 (2)0.80687 (18)0.0503 (6)
H290.77210.74680.76640.060*
N10.69817 (16)0.54668 (18)0.71207 (15)0.0518 (5)
N20.67965 (18)0.6210 (2)0.35176 (15)0.0612 (6)
P10.89629 (4)0.59881 (4)0.68659 (4)0.03763 (14)
S10.63111 (5)0.56870 (6)0.51886 (5)0.05756 (19)
S20.81349 (5)0.64882 (6)0.48486 (4)0.05379 (18)
S30.63080 (8)0.50024 (8)0.87781 (6)0.0838 (3)
Ni10.75893 (2)0.59313 (2)0.60984 (2)0.04025 (10)
U11U22U33U12U13U23
C10.0428 (14)0.0467 (13)0.0524 (16)−0.0003 (10)−0.0034 (11)0.0053 (11)
C20.0488 (15)0.0510 (14)0.0455 (14)0.0054 (11)−0.0073 (11)0.0023 (11)
C30.068 (2)0.098 (3)0.0535 (18)0.0035 (17)−0.0239 (16)−0.0040 (16)
C40.069 (2)0.098 (3)0.086 (3)−0.0164 (19)−0.0205 (19)−0.003 (2)
C50.067 (2)0.078 (2)0.0623 (19)−0.0082 (16)−0.0242 (16)0.0088 (16)
C60.109 (3)0.081 (2)0.084 (3)0.013 (2)−0.023 (2)−0.011 (2)
C70.106 (3)0.111 (3)0.072 (3)0.034 (3)−0.020 (2)−0.023 (2)
C80.091 (3)0.121 (3)0.073 (2)0.033 (3)−0.014 (2)−0.006 (2)
C90.070 (2)0.100 (3)0.063 (2)0.0029 (18)−0.0101 (17)0.0145 (18)
C100.0552 (17)0.0711 (18)0.0505 (16)0.0061 (13)−0.0122 (13)0.0131 (13)
C110.087 (2)0.088 (2)0.0470 (17)−0.0120 (18)−0.0133 (16)0.0092 (15)
C120.0427 (13)0.0472 (13)0.0371 (12)−0.0033 (10)−0.0012 (10)−0.0015 (10)
C130.0558 (16)0.0490 (14)0.0506 (15)−0.0033 (12)0.0039 (12)0.0004 (11)
C140.083 (2)0.0525 (15)0.0543 (17)−0.0181 (15)0.0068 (15)−0.0016 (13)
C150.067 (2)0.082 (2)0.0611 (19)−0.0297 (17)0.0171 (15)−0.0127 (16)
C160.0481 (17)0.083 (2)0.081 (2)−0.0028 (15)0.0127 (15)−0.0028 (18)
C170.0484 (16)0.0613 (16)0.0645 (18)0.0008 (12)0.0058 (13)0.0031 (13)
C180.0359 (12)0.0424 (12)0.0416 (12)0.0001 (9)−0.0062 (9)−0.0004 (10)
C190.0547 (16)0.0523 (15)0.0507 (15)0.0004 (12)−0.0032 (12)−0.0057 (12)
C200.0629 (19)0.0477 (15)0.088 (2)0.0046 (13)−0.0062 (16)−0.0211 (15)
C210.0542 (17)0.0381 (13)0.096 (2)−0.0036 (11)−0.0123 (16)0.0037 (15)
C220.0560 (17)0.0531 (15)0.0664 (18)−0.0091 (12)−0.0106 (14)0.0164 (14)
C230.0524 (15)0.0490 (13)0.0458 (14)−0.0008 (11)−0.0034 (11)0.0031 (11)
C240.0448 (13)0.0396 (11)0.0369 (12)0.0000 (9)0.0003 (10)0.0002 (9)
C250.0569 (16)0.0524 (14)0.0499 (15)0.0060 (12)−0.0120 (12)−0.0062 (12)
C260.079 (2)0.0700 (19)0.0515 (17)−0.0049 (16)−0.0184 (15)−0.0068 (14)
C270.089 (2)0.0596 (17)0.0493 (16)−0.0127 (16)0.0071 (16)−0.0168 (14)
C280.0659 (19)0.0561 (16)0.0646 (18)0.0009 (13)0.0178 (15)−0.0133 (14)
C290.0476 (15)0.0514 (14)0.0519 (15)0.0038 (11)0.0013 (12)−0.0030 (11)
N10.0451 (12)0.0603 (13)0.0498 (13)0.0018 (10)−0.0036 (10)0.0028 (11)
N20.0602 (15)0.0798 (16)0.0428 (13)0.0006 (12)−0.0109 (11)0.0018 (11)
P10.0381 (3)0.0410 (3)0.0336 (3)0.0027 (2)−0.0021 (2)0.0014 (2)
S10.0445 (4)0.0752 (5)0.0522 (4)−0.0037 (3)−0.0108 (3)0.0107 (3)
S20.0529 (4)0.0690 (4)0.0390 (3)−0.0097 (3)−0.0059 (3)0.0059 (3)
S30.1015 (7)0.0936 (7)0.0572 (5)−0.0079 (5)0.0185 (5)0.0166 (4)
Ni10.03948 (18)0.04412 (17)0.03685 (17)0.00331 (12)−0.00393 (12)0.00315 (12)
C1—N11.128 (3)C15—C161.370 (5)
C1—S31.613 (3)C15—H150.9300
C2—N21.315 (3)C16—C171.392 (4)
C2—S11.707 (3)C16—H160.9300
C2—S21.717 (3)C17—H170.9300
C3—N21.464 (4)C18—C231.388 (3)
C3—C41.497 (5)C18—C191.391 (3)
C3—H3A0.9700C18—P11.806 (2)
C3—H3B0.9700C19—C201.385 (4)
C4—C51.464 (5)C19—H190.9300
C4—H4A0.9700C20—C211.374 (5)
C4—H4B0.9700C20—H200.9300
C5—C101.357 (4)C21—C221.364 (4)
C5—C61.449 (5)C21—H210.9300
C6—C71.347 (6)C22—C231.383 (4)
C6—H60.9300C22—H220.9300
C7—C81.402 (6)C23—H230.9300
C7—H70.9300C24—C251.380 (3)
C8—C91.366 (5)C24—C291.381 (3)
C8—H80.9300C24—P11.813 (2)
C9—C101.380 (5)C25—C261.375 (4)
C9—H90.9300C25—H250.9300
C10—C111.553 (5)C26—C271.368 (5)
C11—N21.447 (4)C26—H260.9300
C11—H11A0.9700C27—C281.358 (4)
C11—H11B0.9700C27—H270.9300
C12—C171.374 (4)C28—C291.390 (4)
C12—C131.387 (4)C28—H280.9300
C12—P11.819 (2)C29—H290.9300
C13—C141.380 (4)N1—Ni11.867 (2)
C13—H130.9300P1—Ni12.1874 (6)
C14—C151.367 (5)S1—Ni12.218 (1)
C14—H140.9300S2—Ni12.162 (1)
N1—C1—S3178.2 (3)C12—C17—H17120.0
N2—C2—S1125.6 (2)C16—C17—H17120.0
N2—C2—S2125.3 (2)C23—C18—C19118.6 (2)
S1—C2—S2109.07 (14)C23—C18—P1120.66 (19)
N2—C3—C4111.2 (3)C19—C18—P1120.16 (19)
N2—C3—H3A109.4C20—C19—C18120.0 (3)
C4—C3—H3A109.4C20—C19—H19120.0
N2—C3—H3B109.4C18—C19—H19120.0
C4—C3—H3B109.4C21—C20—C19120.7 (3)
H3A—C3—H3B108.0C21—C20—H20119.6
C5—C4—C3110.2 (3)C19—C20—H20119.6
C5—C4—H4A109.6C22—C21—C20119.5 (3)
C3—C4—H4A109.6C22—C21—H21120.3
C5—C4—H4B109.6C20—C21—H21120.3
C3—C4—H4B109.6C21—C22—C23120.9 (3)
H4A—C4—H4B108.1C21—C22—H22119.6
C10—C5—C6116.6 (4)C23—C22—H22119.6
C10—C5—C4124.8 (3)C22—C23—C18120.3 (3)
C6—C5—C4118.6 (3)C22—C23—H23119.9
C7—C6—C5120.5 (4)C18—C23—H23119.9
C7—C6—H6119.8C25—C24—C29119.4 (2)
C5—C6—H6119.8C25—C24—P1119.81 (19)
C6—C7—C8120.0 (4)C29—C24—P1120.62 (19)
C6—C7—H7120.0C26—C25—C24120.3 (3)
C8—C7—H7120.0C26—C25—H25119.8
C9—C8—C7120.7 (4)C24—C25—H25119.8
C9—C8—H8119.6C27—C26—C25119.9 (3)
C7—C8—H8119.6C27—C26—H26120.0
C8—C9—C10118.5 (4)C25—C26—H26120.0
C8—C9—H9120.8C28—C27—C26120.6 (3)
C10—C9—H9120.8C28—C27—H27119.7
C5—C10—C9123.6 (3)C26—C27—H27119.7
C5—C10—C11119.6 (3)C27—C28—C29120.1 (3)
C9—C10—C11116.8 (3)C27—C28—H28119.9
N2—C11—C10111.1 (3)C29—C28—H28119.9
N2—C11—H11A109.4C24—C29—C28119.6 (3)
C10—C11—H11A109.4C24—C29—H29120.2
N2—C11—H11B109.4C28—C29—H29120.2
C10—C11—H11B109.4C1—N1—Ni1170.9 (2)
H11A—C11—H11B108.0C2—N2—C11123.0 (3)
C17—C12—C13119.1 (2)C2—N2—C3122.9 (3)
C17—C12—P1125.4 (2)C11—N2—C3113.3 (2)
C13—C12—P1115.43 (19)C18—P1—C24106.40 (11)
C14—C13—C12120.6 (3)C18—P1—C12108.54 (11)
C14—C13—H13119.7C24—P1—C12101.53 (11)
C12—C13—H13119.7C18—P1—Ni1105.06 (8)
C15—C14—C13119.9 (3)C24—P1—Ni1116.63 (8)
C15—C14—H14120.1C12—P1—Ni1118.07 (8)
C13—C14—H14120.1C2—S1—Ni185.13 (9)
C14—C15—C16120.2 (3)C2—S2—Ni186.67 (9)
C14—C15—H15119.9N1—Ni1—S2173.69 (7)
C16—C15—H15119.9N1—Ni1—P189.15 (7)
C15—C16—C17120.2 (3)S2—Ni1—P197.07 (3)
C15—C16—H16119.9N1—Ni1—S194.94 (7)
C17—C16—H16119.9S2—Ni1—S179.06 (3)
C12—C17—C16120.0 (3)P1—Ni1—S1170.83 (3)
N2—C3—C4—C5−48.3 (4)C10—C11—N2—C2125.0 (3)
C3—C4—C5—C1019.4 (5)C10—C11—N2—C3−45.3 (4)
C3—C4—C5—C6−162.1 (3)C4—C3—N2—C2−105.5 (4)
C10—C5—C6—C7−1.1 (5)C4—C3—N2—C1164.7 (4)
C4—C5—C6—C7−179.7 (4)C23—C18—P1—C2426.0 (2)
C5—C6—C7—C80.3 (6)C19—C18—P1—C24−162.5 (2)
C6—C7—C8—C90.9 (6)C23—C18—P1—C12134.6 (2)
C7—C8—C9—C10−1.3 (5)C19—C18—P1—C12−53.9 (2)
C6—C5—C10—C90.7 (5)C23—C18—P1—Ni1−98.25 (19)
C4—C5—C10—C9179.2 (3)C19—C18—P1—Ni173.2 (2)
C6—C5—C10—C11178.6 (3)C25—C24—P1—C1850.6 (2)
C4—C5—C10—C11−2.9 (5)C29—C24—P1—C18−133.8 (2)
C8—C9—C10—C50.5 (5)C25—C24—P1—C12−62.8 (2)
C8—C9—C10—C11−177.4 (3)C29—C24—P1—C12112.7 (2)
C5—C10—C11—N215.0 (4)C25—C24—P1—Ni1167.41 (18)
C9—C10—C11—N2−167.0 (3)C29—C24—P1—Ni1−17.1 (2)
C17—C12—C13—C140.1 (4)C17—C12—P1—C18−5.7 (3)
P1—C12—C13—C14177.2 (2)C13—C12—P1—C18177.39 (19)
C12—C13—C14—C151.0 (4)C17—C12—P1—C24106.1 (2)
C13—C14—C15—C16−0.9 (5)C13—C12—P1—C24−70.8 (2)
C14—C15—C16—C17−0.2 (5)C17—C12—P1—Ni1−125.0 (2)
C13—C12—C17—C16−1.3 (4)C13—C12—P1—Ni158.1 (2)
P1—C12—C17—C16−178.1 (2)N2—C2—S1—Ni1176.0 (3)
C15—C16—C17—C121.4 (5)S2—C2—S1—Ni1−2.32 (12)
C23—C18—C19—C20−2.4 (4)N2—C2—S2—Ni1−176.0 (2)
P1—C18—C19—C20−174.1 (2)S1—C2—S2—Ni12.37 (12)
C18—C19—C20—C211.4 (4)C1—N1—Ni1—S2−139.3 (12)
C19—C20—C21—C220.6 (4)C1—N1—Ni1—P130.9 (14)
C20—C21—C22—C23−1.5 (4)C1—N1—Ni1—S1−157.3 (14)
C21—C22—C23—C180.4 (4)C2—S2—Ni1—N1−20.1 (7)
C19—C18—C23—C221.6 (4)C2—S2—Ni1—P1169.83 (9)
P1—C18—C23—C22173.2 (2)C2—S2—Ni1—S1−1.76 (9)
C29—C24—C25—C261.6 (4)C18—P1—Ni1—N164.00 (11)
P1—C24—C25—C26177.2 (2)C24—P1—Ni1—N1−53.51 (11)
C24—C25—C26—C27−1.3 (5)C12—P1—Ni1—N1−174.89 (12)
C25—C26—C27—C280.2 (5)C18—P1—Ni1—S2−117.09 (9)
C26—C27—C28—C290.6 (5)C24—P1—Ni1—S2125.41 (9)
C25—C24—C29—C28−0.8 (4)C12—P1—Ni1—S24.03 (9)
P1—C24—C29—C28−176.4 (2)C18—P1—Ni1—S1−52.7 (2)
C27—C28—C29—C24−0.3 (4)C24—P1—Ni1—S1−170.20 (18)
S3—C1—N1—Ni146 (9)C12—P1—Ni1—S168.4 (2)
S1—C2—N2—C11−175.1 (2)C2—S1—Ni1—N1179.78 (11)
S2—C2—N2—C113.0 (4)C2—S1—Ni1—S21.77 (9)
S1—C2—N2—C3−5.8 (4)C2—S1—Ni1—P1−63.9 (2)
S2—C2—N2—C3172.3 (2)
Table 1

Selected bond lengths (Å)

N1—Ni11.867 (2)
P1—Ni12.1874 (6)
S1—Ni12.218 (1)
S2—Ni12.162 (1)
  4 in total

1.  5-Nitroimidazole derivatives as possible antibacterial and antifungal agents.

Authors:  N S Günay; G Capan; N Ulusoy; N Ergenç; G Otük; D Kaya
Journal:  Farmaco       Date:  1999 Nov-Dec

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis of new triazolyl-N,N-dialkyldithiocarbamates as antifungal agents.

Authors:  Sumru Ozkirimli; T Idil Apak; Muammer Kiraz; Yildiz Yegenoglu
Journal:  Arch Pharm Res       Date:  2005-11       Impact factor: 4.946

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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