Literature DB >> 22199631

(Nitrato-κO)bis-[5-(pyridin-2-yl)pyrazine-2-carbonitrile-κN,N]silver(I).

Fan Zhang1, Yong-Li Yang.   

Abstract

In the mononuclear title complex, [Ag(NO(3))(C(10)H(6)N(4))(2)], two κ(2)N:N'-chelating 5-(pyridin-2-yl)pyrazine-2-carbonitrile ligands surround the Ag(I) atom, forming an N(4)O square-pyramidal coordination geometry with one nitrate anion bonding at the apical site. The two heterocyclic rings of the 5-(2-pyridin-2--yl)pyrazine-2-carbonitrile ligand are almost coplanar [dihedral angle = 5.63 (8)°], and the two chelating ligands are in an anti relationship. The mononuclear units are inter-connected along [010] through C-H⋯O(nitrate) and C-H⋯N(cyano) inter-actions, forming an infinite chain. The mononuclear units are stacked along the a axis and inter-connected via inter-molecular π-π stacking inter-actions between adjacent pyridine and pyrazine rings [centroid-centroid distances = 3.984 (2) and 3.595 (3) Å], thus forming a three-dimensional supra-molecular structure.

Entities:  

Year:  2011        PMID: 22199631      PMCID: PMC3238754          DOI: 10.1107/S1600536811049221

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For coordination complexes with pyridyl-based ligands, see: Dunne et al. (1997 ▶); Wang et al. (2009 ▶). For a related complex with 5-(2-pyridin-2-­yl)pyrazine-2-carbonitrile, see: Wang et al. (2010 ▶).

Experimental

Crystal data

[Ag(NO3)(C10H6N4)2] M = 534.26 Orthorhombic, a = 14.000 (3) Å b = 12.133 (2) Å c = 23.832 (4) Å V = 4048.4 (13) Å3 Z = 8 Mo Kα radiation μ = 1.04 mm−1 T = 293 K 0.44 × 0.35 × 0.25 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.631, T max = 1.000 27695 measured reflections 5029 independent reflections 3255 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.099 S = 1.03 5029 reflections 298 parameters H-atom parameters constrained Δρmax = 0.46 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811049221/zq2135sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811049221/zq2135Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ag(NO3)(C10H6N4)2]Z = 8
Mr = 534.26F(000) = 2128
Orthorhombic, PbcaDx = 1.753 Mg m3
Hall symbol: -P 2ac 2abMo Kα radiation, λ = 0.71073 Å
a = 14.000 (3) ŵ = 1.04 mm1
b = 12.133 (2) ÅT = 293 K
c = 23.832 (4) ÅBlock, yellow
V = 4048.4 (13) Å30.44 × 0.35 × 0.25 mm
Bruker APEXII CCD area-detector diffractometer5029 independent reflections
Radiation source: fine-focus sealed tube3255 reflections with I > 2σ(I)
graphiteRint = 0.037
ω scansθmax = 28.3°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −18→16
Tmin = 0.631, Tmax = 1.000k = −12→16
27695 measured reflectionsl = −31→31
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.099H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0413P)2 + 2.5136P] P = (Fo2 + 2Fc2)/3
5029 reflections(Δ/σ)max = 0.002
298 parametersΔρmax = 0.46 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ag10.15007 (2)0.51787 (2)0.601301 (9)0.06172 (11)
N50.1257 (2)0.6243 (2)0.69391 (10)0.0614 (7)
N20.14122 (18)0.4141 (2)0.50864 (9)0.0578 (6)
C190.1326 (3)0.7327 (3)0.70324 (12)0.0667 (9)
H19A0.13530.78070.67290.080*
C160.1216 (2)0.5589 (2)0.73859 (11)0.0483 (6)
N60.1332 (2)0.7114 (2)0.80173 (10)0.0705 (8)
C150.1147 (2)0.4379 (2)0.72912 (11)0.0462 (6)
C200.1401 (3)0.8922 (3)0.76683 (13)0.0628 (8)
C180.1356 (2)0.7745 (2)0.75668 (12)0.0539 (7)
C10.1550 (2)0.3072 (3)0.49880 (13)0.0640 (8)
H1A0.16960.26080.52860.077*
N40.11379 (19)0.4031 (2)0.67615 (9)0.0540 (6)
N30.1261 (3)0.3264 (3)0.40160 (11)0.0812 (9)
C40.1200 (2)0.4781 (3)0.46515 (11)0.0538 (7)
C50.1057 (2)0.5976 (3)0.47527 (11)0.0522 (7)
N80.1425 (3)0.9830 (3)0.77670 (15)0.0860 (11)
C20.1481 (2)0.2638 (3)0.44573 (13)0.0618 (8)
C130.1112 (3)0.2529 (3)0.76347 (13)0.0649 (9)
H13A0.11020.20270.79300.078*
N10.1064 (2)0.6321 (2)0.52862 (9)0.0609 (7)
C17B0.1266 (3)0.6037 (3)0.79202 (12)0.0690 (10)
H17A0.12520.55610.82260.083*
C110.1116 (3)0.2943 (3)0.66699 (12)0.0643 (9)
H11A0.11000.26940.63010.077*
C60.0916 (3)0.6712 (3)0.43157 (12)0.0668 (9)
H6A0.09070.64610.39470.080*
C140.1122 (3)0.3652 (3)0.77357 (12)0.0606 (8)
H14A0.11120.39150.81020.073*
C120.1117 (3)0.2179 (3)0.70918 (13)0.0637 (8)
H12A0.11200.14300.70090.076*
C100.1610 (3)0.1471 (4)0.43460 (15)0.0709 (9)
C90.0938 (3)0.7393 (3)0.53821 (13)0.0724 (10)
H9A0.09410.76310.57530.087*
C70.0789 (3)0.7812 (3)0.44284 (13)0.0761 (11)
H7A0.06930.83110.41370.091*
C80.0805 (3)0.8168 (3)0.49718 (14)0.0752 (10)
H8A0.07280.89090.50600.090*
N70.1715 (3)0.0567 (3)0.42452 (16)0.0910 (10)
C30.1130 (3)0.4318 (3)0.41204 (13)0.0793 (11)
H3A0.09810.47800.38210.095*
N90.3705 (3)0.5055 (3)0.60786 (12)0.0663 (8)
O10.3136 (2)0.4333 (3)0.61980 (14)0.0984 (9)
O20.3387 (3)0.5884 (3)0.58609 (14)0.1118 (11)
O30.4546 (3)0.4916 (3)0.61817 (18)0.1278 (13)
U11U22U33U12U13U23
Ag10.0916 (2)0.06265 (17)0.03086 (12)0.00339 (13)−0.00402 (10)0.01006 (10)
N50.105 (2)0.0443 (14)0.0350 (12)−0.0033 (13)0.0086 (12)0.0042 (10)
N20.0754 (17)0.0645 (17)0.0334 (11)0.0054 (13)−0.0044 (11)0.0051 (11)
C190.114 (3)0.0477 (18)0.0387 (14)−0.0044 (17)0.0097 (16)0.0058 (13)
C160.0663 (18)0.0449 (15)0.0339 (13)0.0023 (13)0.0041 (11)0.0039 (11)
N60.124 (3)0.0491 (15)0.0385 (12)0.0014 (15)0.0042 (14)−0.0024 (12)
C150.0623 (17)0.0428 (15)0.0334 (12)0.0014 (13)0.0018 (11)−0.0008 (11)
C200.090 (2)0.050 (2)0.0479 (16)−0.0007 (17)0.0101 (16)−0.0005 (14)
C180.072 (2)0.0433 (16)0.0464 (15)0.0000 (14)0.0079 (13)−0.0014 (13)
C10.080 (2)0.069 (2)0.0432 (16)0.0067 (17)−0.0080 (15)0.0051 (15)
N40.0842 (17)0.0446 (14)0.0332 (11)0.0018 (12)0.0021 (11)0.0007 (10)
N30.127 (3)0.077 (2)0.0402 (14)−0.0038 (19)−0.0035 (15)−0.0020 (14)
C40.0628 (18)0.066 (2)0.0320 (13)−0.0044 (15)0.0005 (12)0.0074 (13)
C50.0596 (17)0.0646 (19)0.0322 (12)−0.0027 (15)−0.0009 (12)0.0089 (12)
N80.139 (3)0.0503 (18)0.069 (2)−0.0001 (18)0.0090 (19)−0.0048 (15)
C20.068 (2)0.068 (2)0.0493 (16)−0.0040 (17)−0.0014 (14)−0.0036 (15)
C130.104 (3)0.0476 (18)0.0434 (15)−0.0059 (17)−0.0042 (16)0.0107 (13)
N10.0833 (18)0.0636 (17)0.0358 (12)−0.0005 (14)−0.0047 (12)0.0078 (12)
C17B0.128 (3)0.0420 (17)0.0372 (15)0.0015 (18)0.0034 (16)0.0044 (13)
C110.108 (3)0.0482 (18)0.0373 (15)−0.0021 (17)−0.0001 (15)−0.0038 (13)
C60.087 (2)0.078 (2)0.0353 (14)0.0091 (19)0.0002 (14)0.0127 (15)
C140.097 (2)0.0517 (18)0.0330 (14)−0.0058 (17)−0.0010 (14)0.0045 (13)
C120.097 (2)0.0418 (17)0.0527 (17)−0.0037 (16)−0.0004 (16)−0.0017 (14)
C100.074 (2)0.080 (3)0.059 (2)0.000 (2)−0.0075 (16)−0.0096 (19)
C90.106 (3)0.068 (2)0.0438 (16)0.003 (2)−0.0050 (17)0.0031 (16)
C70.104 (3)0.075 (3)0.0491 (18)0.014 (2)0.0014 (18)0.0234 (17)
C80.102 (3)0.066 (2)0.0574 (19)0.0054 (19)−0.0033 (18)0.0120 (17)
N70.097 (3)0.078 (2)0.098 (3)0.004 (2)−0.022 (2)−0.021 (2)
C30.134 (3)0.069 (2)0.0357 (15)−0.003 (2)−0.0082 (18)0.0084 (16)
N90.083 (2)0.065 (2)0.0509 (16)−0.0066 (15)0.0031 (14)−0.0043 (13)
O10.093 (2)0.084 (2)0.118 (2)−0.0032 (17)−0.0003 (17)0.0475 (18)
O20.175 (3)0.0582 (17)0.102 (2)−0.0110 (18)−0.027 (2)0.0188 (17)
O30.078 (2)0.156 (3)0.150 (3)−0.005 (2)−0.008 (2)−0.026 (2)
Ag1—N12.301 (2)C4—C51.483 (4)
Ag1—N42.319 (2)C5—N11.338 (4)
Ag1—N22.545 (3)C5—C61.386 (4)
Ag1—O12.547 (3)C2—C101.453 (6)
Ag1—N52.579 (2)C13—C121.362 (4)
N5—C161.329 (3)C13—C141.383 (4)
N5—C191.338 (4)C13—H13A0.9300
N2—C41.329 (4)N1—C91.333 (4)
N2—C11.332 (4)C17B—H17A0.9300
C19—C181.371 (4)C11—C121.368 (4)
C19—H19A0.9300C11—H11A0.9300
C16—C17B1.386 (4)C6—C71.374 (5)
C16—C151.489 (4)C6—H6A0.9300
N6—C181.319 (4)C14—H14A0.9300
N6—C17B1.331 (4)C12—H12A0.9300
C15—N41.331 (3)C10—N71.132 (5)
C15—C141.379 (4)C9—C81.369 (4)
C20—N81.128 (4)C9—H9A0.9300
C20—C181.450 (4)C7—C81.365 (5)
C1—C21.373 (4)C7—H7A0.9300
C1—H1A0.9300C8—H8A0.9300
N4—C111.338 (4)C3—H3A0.9300
N3—C31.317 (5)N9—O31.215 (5)
N3—C21.333 (4)N9—O21.216 (4)
C4—C31.388 (4)N9—O11.218 (4)
N1—Ag1—N4151.94 (10)C6—C5—C4121.8 (3)
N1—Ag1—N268.39 (9)N3—C2—C1121.7 (3)
N4—Ag1—N2111.09 (9)N3—C2—C10116.1 (3)
N1—Ag1—O1127.70 (10)C1—C2—C10122.2 (3)
N4—Ag1—O179.74 (9)C12—C13—C14118.2 (3)
N2—Ag1—O189.70 (10)C12—C13—H13A120.9
N1—Ag1—N5107.92 (9)C14—C13—H13A120.9
N4—Ag1—N567.26 (8)C9—N1—C5117.8 (3)
N2—Ag1—N5169.60 (9)C9—N1—Ag1119.6 (2)
O1—Ag1—N599.92 (10)C5—N1—Ag1121.9 (2)
C16—N5—C19117.2 (3)N6—C17B—C16123.2 (3)
C16—N5—Ag1113.13 (18)N6—C17B—H17A118.4
C19—N5—Ag1128.68 (19)C16—C17B—H17A118.4
C4—N2—C1117.6 (3)N4—C11—C12123.3 (3)
C4—N2—Ag1113.5 (2)N4—C11—H11A118.4
C1—N2—Ag1128.9 (2)C12—C11—H11A118.4
N5—C19—C18121.4 (3)C7—C6—C5119.8 (3)
N5—C19—H19A119.3C7—C6—H6A120.1
C18—C19—H19A119.3C5—C6—H6A120.1
N5—C16—C17B120.0 (3)C15—C14—C13119.8 (3)
N5—C16—C15118.0 (2)C15—C14—H14A120.1
C17B—C16—C15121.9 (2)C13—C14—H14A120.1
C18—N6—C17B115.5 (3)C13—C12—C11119.1 (3)
N4—C15—C14121.7 (3)C13—C12—H12A120.4
N4—C15—C16117.2 (2)C11—C12—H12A120.4
C14—C15—C16121.1 (2)N7—C10—C2178.2 (4)
N8—C20—C18177.4 (4)N1—C9—C8124.5 (3)
N6—C18—C19122.7 (3)N1—C9—H9A117.8
N6—C18—C20115.9 (3)C8—C9—H9A117.8
C19—C18—C20121.4 (3)C8—C7—C6119.4 (3)
N2—C1—C2121.7 (3)C8—C7—H7A120.3
N2—C1—H1A119.2C6—C7—H7A120.3
C2—C1—H1A119.2C7—C8—C9117.5 (3)
C15—N4—C11117.9 (2)C7—C8—H8A121.2
C15—N4—Ag1122.46 (19)C9—C8—H8A121.2
C11—N4—Ag1118.15 (19)N3—C3—C4123.7 (3)
C3—N3—C2115.9 (3)N3—C3—H3A118.1
N2—C4—C3119.4 (3)C4—C3—H3A118.1
N2—C4—C5118.3 (2)O3—N9—O2123.7 (4)
C3—C4—C5122.3 (3)O3—N9—O1119.2 (4)
N1—C5—C6120.9 (3)O2—N9—O1117.0 (4)
N1—C5—C4117.3 (2)N9—O1—Ag1105.0 (2)
N1—Ag1—N5—C16161.6 (2)Ag1—N2—C4—C50.6 (3)
N4—Ag1—N5—C1611.1 (2)N2—C4—C5—N1−5.9 (4)
N2—Ag1—N5—C1694.1 (5)C3—C4—C5—N1174.7 (3)
O1—Ag1—N5—C16−63.2 (2)N2—C4—C5—C6174.4 (3)
N1—Ag1—N5—C19−30.4 (3)C3—C4—C5—C6−5.0 (5)
N4—Ag1—N5—C19179.1 (3)C3—N3—C2—C10.9 (6)
N2—Ag1—N5—C19−98.0 (5)C3—N3—C2—C10179.0 (4)
O1—Ag1—N5—C19104.7 (3)N2—C1—C2—N3−0.8 (5)
N1—Ag1—N2—C42.6 (2)N2—C1—C2—C10−178.8 (3)
N4—Ag1—N2—C4152.4 (2)C6—C5—N1—C9−0.5 (5)
O1—Ag1—N2—C4−128.7 (2)C4—C5—N1—C9179.8 (3)
N5—Ag1—N2—C473.6 (5)C6—C5—N1—Ag1−171.4 (2)
N1—Ag1—N2—C1−177.5 (3)C4—C5—N1—Ag18.9 (4)
N4—Ag1—N2—C1−27.7 (3)N4—Ag1—N1—C988.5 (3)
O1—Ag1—N2—C151.2 (3)N2—Ag1—N1—C9−176.9 (3)
N5—Ag1—N2—C1−106.5 (5)O1—Ag1—N1—C9−105.2 (3)
C16—N5—C19—C180.2 (5)N5—Ag1—N1—C913.4 (3)
Ag1—N5—C19—C18−167.3 (3)N4—Ag1—N1—C5−100.8 (3)
C19—N5—C16—C17B−1.4 (5)N2—Ag1—N1—C5−6.2 (2)
Ag1—N5—C16—C17B168.0 (3)O1—Ag1—N1—C565.5 (3)
C19—N5—C16—C15−179.5 (3)N5—Ag1—N1—C5−175.9 (2)
Ag1—N5—C16—C15−10.1 (3)C18—N6—C17B—C16−0.6 (6)
N5—C16—C15—N40.4 (4)N5—C16—C17B—N61.7 (6)
C17B—C16—C15—N4−177.7 (3)C15—C16—C17B—N6179.7 (3)
N5—C16—C15—C14178.7 (3)C15—N4—C11—C12−0.9 (5)
C17B—C16—C15—C140.6 (5)Ag1—N4—C11—C12165.4 (3)
C17B—N6—C18—C19−0.7 (5)N1—C5—C6—C70.5 (5)
C17B—N6—C18—C20178.4 (3)C4—C5—C6—C7−179.8 (3)
N5—C19—C18—N60.9 (6)N4—C15—C14—C131.8 (5)
N5—C19—C18—C20−178.1 (3)C16—C15—C14—C13−176.4 (3)
C4—N2—C1—C20.3 (5)C12—C13—C14—C15−0.7 (6)
Ag1—N2—C1—C2−179.6 (2)C14—C13—C12—C11−1.0 (6)
C14—C15—N4—C11−0.9 (5)N4—C11—C12—C131.9 (6)
C16—C15—N4—C11177.3 (3)C5—N1—C9—C8−0.2 (6)
C14—C15—N4—Ag1−166.7 (2)Ag1—N1—C9—C8170.9 (3)
C16—C15—N4—Ag111.5 (4)C5—C6—C7—C80.1 (6)
N1—Ag1—N4—C15−97.5 (3)C6—C7—C8—C9−0.7 (6)
N2—Ag1—N4—C15179.1 (2)N1—C9—C8—C70.8 (6)
O1—Ag1—N4—C1593.5 (3)C2—N3—C3—C4−0.5 (6)
N5—Ag1—N4—C15−11.9 (2)N2—C4—C3—N30.0 (6)
N1—Ag1—N4—C1196.8 (3)C5—C4—C3—N3179.4 (4)
N2—Ag1—N4—C1113.4 (3)O3—N9—O1—Ag1172.5 (3)
O1—Ag1—N4—C11−72.3 (3)O2—N9—O1—Ag1−7.3 (4)
N5—Ag1—N4—C11−177.7 (3)N1—Ag1—O1—N939.1 (3)
C1—N2—C4—C30.1 (5)N4—Ag1—O1—N9−147.4 (3)
Ag1—N2—C4—C3180.0 (3)N2—Ag1—O1—N9101.1 (2)
C1—N2—C4—C5−179.3 (3)N5—Ag1—O1—N9−82.9 (2)
D—H···AD—HH···AD···AD—H···A
C19—H19A···O1i0.932.353.233 (3)157
C11—H11A···O2ii0.932.543.232 (5)132
C13—H13A···N8iii0.932.733.319 (3)122
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C19—H19A⋯O1i0.932.353.233 (3)157
C11—H11A⋯O2ii0.932.543.232 (5)132
C13—H13A⋯N8iii0.932.733.319 (3)122

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Bis[5-(2-pyrid-yl)pyrazine-2-carbonitrile]-silver(I) tetra-fluorido-borate.

Authors:  Zi-Jia Wang; Fan Zhang; Chong-Qing Wan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-08

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total
  2 in total

1.  Tetra-kis[bis-(pyridin-2-yl)amine-κN (2)](nitrato-κO)silver(I).

Authors:  Yuliia Parashchenko; Anna Pavlishchuk; Nadezhda A Bokach; Matti Haukka
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-01-22

2.  Bis[5-(pyridin-2-yl)pyrazine-2-carbo-nitrile-κ(2)N(4),N(5)](trifluoro-acetato-κO)silver(I).

Authors:  Jing Li; Xiao Cuan Jia; Jun Qi; Yuan Yuan Liu; Yu Ding
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-06
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.