| Literature DB >> 22199630 |
Xiao-Hong Zhu1, Xiao-Chun Cheng.
Abstract
In the title polymer, {[Co(C(14)H(10)N(2)O(4))(H(2)O)]·3.5H(2)O}(n), the Co(2+) ion is coordinated by three carboxyl-ate O atoms from two 5-[(pyridin-2-ylmeth-yl)amino]-isophthalate anions, two N atoms from a (pyridin-2-ylmeth-yl)amino group and an O atom from a water mol-ecule, furnishing a distorted CoO(4)N(2) octa-hedral geometry. Each anion acts as a μ(3)-bridge, linking cobalt ions into a two-dimensional layer parallel to (100). The asymmetric unit also contains three and a half solvent water mol-ecules, which could not be modeled. Therefore, the diffraction contribution of the solvent water mol-ecules was removed by the subroutine SQUEEZE in PLATON [Spek (2009). Acta Cryst. D65, 148-155]. The crystal structure is stabilized by O-H⋯O hydrogen bonds in which the coordinated water mol-ecule acts as donor and the carboxyl-ate O atoms as acceptors.Entities:
Year: 2011 PMID: 22199630 PMCID: PMC3238753 DOI: 10.1107/S1600536811050318
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Co(C14H10N2O4)(H2O)]·3.5H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 6314 reflections |
| θ = 2.4–28.4° | |
| µ = 1.05 mm−1 | |
| β = 116.533 (5)° | Block, red |
| 0.20 × 0.20 × 0.20 mm | |
| Bruker SMART APEXII CCD diffractometer | 4259 independent reflections |
| Radiation source: fine-focus sealed tube | 3809 reflections with |
| graphite | |
| φ and ω scans | θmax = 28.4°, θmin = 2.1° |
| Absorption correction: multi-scan ( | |
| 11993 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 4259 reflections | (Δ/σ)max = 0.001 |
| 199 parameters | Δρmax = 0.81 e Å−3 |
| 0 restraints | Δρmin = −0.43 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.8386 (3) | 0.5358 (3) | 0.59337 (16) | 0.0210 (5) | |
| C2 | 0.8790 (3) | 0.5330 (3) | 0.68135 (17) | 0.0225 (5) | |
| H2 | 0.8344 | 0.5858 | 0.7048 | 0.027* | |
| C3 | 0.9868 (3) | 0.4503 (3) | 0.73445 (16) | 0.0217 (5) | |
| C4 | 1.0543 (3) | 0.3722 (3) | 0.70059 (16) | 0.0214 (5) | |
| H4 | 1.1273 | 0.3195 | 0.7364 | 0.026* | |
| C5 | 1.0122 (3) | 0.3726 (3) | 0.61166 (16) | 0.0216 (5) | |
| C6 | 0.9043 (3) | 0.4529 (3) | 0.55925 (17) | 0.0231 (5) | |
| H6 | 0.8752 | 0.4514 | 0.5003 | 0.028* | |
| C7 | 1.0840 (3) | 0.2913 (3) | 0.57301 (17) | 0.0232 (5) | |
| C8 | 1.0286 (3) | 0.4465 (3) | 0.82983 (17) | 0.0242 (5) | |
| C9 | 0.6291 (3) | 0.6616 (3) | 0.55952 (19) | 0.0291 (6) | |
| H9A | 0.6685 | 0.7056 | 0.6151 | 0.035* | |
| H9B | 0.5806 | 0.5819 | 0.5630 | 0.035* | |
| C10 | 0.5346 (3) | 0.7568 (3) | 0.49261 (18) | 0.0261 (5) | |
| C11 | 0.3962 (3) | 0.7546 (3) | 0.4660 (2) | 0.0375 (7) | |
| H11 | 0.3587 | 0.6926 | 0.4894 | 0.045* | |
| C12 | 0.3154 (3) | 0.8459 (4) | 0.4045 (3) | 0.0453 (9) | |
| H12 | 0.2226 | 0.8456 | 0.3856 | 0.054* | |
| C13 | 0.3740 (3) | 0.9382 (4) | 0.3709 (2) | 0.0419 (8) | |
| H13 | 0.3216 | 1.0010 | 0.3297 | 0.050* | |
| C14 | 0.5124 (3) | 0.9341 (3) | 0.4002 (2) | 0.0333 (6) | |
| H14 | 0.5523 | 0.9954 | 0.3781 | 0.040* | |
| Co1 | 1.20146 (4) | 0.17514 (4) | 0.49770 (2) | 0.02074 (11) | |
| N1 | 0.7352 (2) | 0.6226 (2) | 0.53540 (15) | 0.0239 (5) | |
| H1N | 0.6876 | 0.5862 | 0.4822 | 0.029* | |
| N2 | 0.5908 (2) | 0.8448 (2) | 0.45967 (15) | 0.0243 (5) | |
| O1 | 1.0210 (2) | 0.2537 (2) | 0.49556 (13) | 0.0298 (4) | |
| O2 | 1.2068 (2) | 0.2644 (2) | 0.61450 (14) | 0.0318 (5) | |
| O3 | 1.1274 (2) | 0.3701 (2) | 0.87308 (12) | 0.0270 (4) | |
| O4 | 0.9694 (3) | 0.5200 (3) | 0.86000 (15) | 0.0454 (6) | |
| O5 | 1.1716 (2) | −0.0155 (2) | 0.54116 (15) | 0.0337 (5) | |
| H5WA | 1.1069 | −0.0587 | 0.4995 | 0.040* | |
| H5W | 1.1367 | −0.0012 | 0.5799 | 0.040* |
| C1 | 0.0250 (12) | 0.0200 (12) | 0.0202 (12) | 0.0001 (10) | 0.0119 (10) | 0.0011 (9) |
| C2 | 0.0271 (13) | 0.0227 (12) | 0.0222 (12) | 0.0027 (10) | 0.0151 (10) | 0.0014 (10) |
| C3 | 0.0277 (13) | 0.0225 (12) | 0.0175 (11) | −0.0013 (10) | 0.0123 (10) | −0.0010 (9) |
| C4 | 0.0258 (12) | 0.0208 (12) | 0.0190 (11) | 0.0020 (10) | 0.0113 (10) | 0.0015 (9) |
| C5 | 0.0289 (13) | 0.0210 (12) | 0.0196 (12) | −0.0015 (10) | 0.0150 (10) | −0.0012 (9) |
| C6 | 0.0297 (13) | 0.0236 (12) | 0.0182 (11) | −0.0003 (10) | 0.0127 (10) | −0.0004 (10) |
| C7 | 0.0330 (14) | 0.0202 (12) | 0.0232 (12) | 0.0004 (10) | 0.0187 (11) | 0.0002 (10) |
| C8 | 0.0338 (14) | 0.0241 (13) | 0.0202 (12) | −0.0003 (11) | 0.0170 (11) | 0.0002 (10) |
| C9 | 0.0282 (14) | 0.0330 (15) | 0.0322 (15) | 0.0032 (12) | 0.0188 (12) | 0.0063 (12) |
| C10 | 0.0263 (13) | 0.0258 (13) | 0.0275 (13) | 0.0020 (11) | 0.0133 (11) | −0.0011 (11) |
| C11 | 0.0260 (14) | 0.0339 (16) | 0.051 (2) | −0.0013 (12) | 0.0157 (14) | 0.0028 (14) |
| C12 | 0.0244 (15) | 0.0425 (19) | 0.064 (2) | 0.0062 (14) | 0.0155 (15) | 0.0073 (17) |
| C13 | 0.0323 (16) | 0.0419 (18) | 0.0445 (19) | 0.0135 (14) | 0.0110 (14) | 0.0100 (15) |
| C14 | 0.0347 (15) | 0.0333 (15) | 0.0318 (15) | 0.0097 (13) | 0.0149 (13) | 0.0072 (12) |
| Co1 | 0.02195 (19) | 0.0267 (2) | 0.01563 (17) | 0.00285 (14) | 0.01024 (13) | 0.00087 (13) |
| N1 | 0.0257 (11) | 0.0274 (11) | 0.0203 (10) | 0.0046 (9) | 0.0117 (9) | 0.0020 (9) |
| N2 | 0.0241 (11) | 0.0259 (11) | 0.0234 (11) | 0.0032 (9) | 0.0110 (9) | 0.0016 (9) |
| O1 | 0.0366 (11) | 0.0365 (11) | 0.0191 (9) | 0.0087 (9) | 0.0150 (8) | −0.0012 (8) |
| O2 | 0.0298 (10) | 0.0399 (12) | 0.0307 (11) | −0.0009 (9) | 0.0179 (9) | −0.0085 (9) |
| O3 | 0.0306 (10) | 0.0348 (11) | 0.0181 (9) | 0.0023 (9) | 0.0131 (8) | 0.0022 (8) |
| O4 | 0.0668 (16) | 0.0505 (15) | 0.0279 (11) | 0.0300 (13) | 0.0293 (12) | 0.0095 (10) |
| O5 | 0.0338 (11) | 0.0296 (11) | 0.0398 (12) | −0.0010 (9) | 0.0183 (10) | 0.0026 (9) |
| C1—C2 | 1.393 (4) | C10—C11 | 1.391 (4) |
| C1—C6 | 1.394 (4) | C11—C12 | 1.381 (5) |
| C1—N1 | 1.427 (3) | C11—H11 | 0.9300 |
| C2—C3 | 1.402 (4) | C12—C13 | 1.392 (5) |
| C2—H2 | 0.9300 | C12—H12 | 0.9300 |
| C3—C4 | 1.377 (4) | C13—C14 | 1.384 (5) |
| C3—C8 | 1.514 (3) | C13—H13 | 0.9300 |
| C4—C5 | 1.405 (3) | C14—N2 | 1.343 (4) |
| C4—H4 | 0.9300 | C14—H14 | 0.9300 |
| C5—C6 | 1.385 (4) | Co1—O3i | 1.9999 (19) |
| C5—C7 | 1.488 (3) | Co1—N2ii | 2.090 (2) |
| C6—H6 | 0.9300 | Co1—O5 | 2.110 (2) |
| C7—O2 | 1.252 (4) | Co1—O1 | 2.132 (2) |
| C7—O1 | 1.267 (3) | Co1—O2 | 2.195 (2) |
| C8—O4 | 1.242 (3) | Co1—N1ii | 2.275 (2) |
| C8—O3 | 1.265 (3) | N1—Co1ii | 2.275 (2) |
| C9—N1 | 1.468 (3) | N1—H1N | 0.9118 |
| C9—C10 | 1.500 (4) | N2—Co1ii | 2.090 (2) |
| C9—H9A | 0.9700 | O3—Co1iii | 1.9999 (19) |
| C9—H9B | 0.9700 | O5—H5WA | 0.8710 |
| C10—N2 | 1.339 (4) | O5—H5W | 0.9279 |
| C2—C1—C6 | 119.1 (2) | C13—C12—H12 | 120.3 |
| C2—C1—N1 | 123.6 (2) | C14—C13—C12 | 118.3 (3) |
| C6—C1—N1 | 117.3 (2) | C14—C13—H13 | 120.8 |
| C1—C2—C3 | 119.9 (2) | C12—C13—H13 | 120.8 |
| C1—C2—H2 | 120.1 | N2—C14—C13 | 122.3 (3) |
| C3—C2—H2 | 120.1 | N2—C14—H14 | 118.9 |
| C4—C3—C2 | 120.7 (2) | C13—C14—H14 | 118.9 |
| C4—C3—C8 | 119.9 (2) | O3i—Co1—N2ii | 102.58 (9) |
| C2—C3—C8 | 119.4 (2) | O3i—Co1—O5 | 97.84 (9) |
| C3—C4—C5 | 119.6 (2) | N2ii—Co1—O5 | 96.50 (9) |
| C3—C4—H4 | 120.2 | O3i—Co1—O1 | 97.79 (8) |
| C5—C4—H4 | 120.2 | N2ii—Co1—O1 | 156.61 (9) |
| C6—C5—C4 | 119.5 (2) | O5—Co1—O1 | 91.96 (8) |
| C6—C5—C7 | 119.3 (2) | O3i—Co1—O2 | 157.69 (8) |
| C4—C5—C7 | 121.1 (2) | N2ii—Co1—O2 | 98.01 (9) |
| C5—C6—C1 | 121.1 (2) | O5—Co1—O2 | 88.21 (9) |
| C5—C6—H6 | 119.4 | O1—Co1—O2 | 60.40 (8) |
| C1—C6—H6 | 119.4 | O3i—Co1—N1ii | 86.81 (8) |
| O2—C7—O1 | 119.6 (2) | N2ii—Co1—N1ii | 75.91 (9) |
| O2—C7—C5 | 121.1 (2) | O5—Co1—N1ii | 171.88 (9) |
| O1—C7—C5 | 119.2 (2) | O1—Co1—N1ii | 94.02 (8) |
| O4—C8—O3 | 125.3 (3) | O2—Co1—N1ii | 89.96 (8) |
| O4—C8—C3 | 119.4 (3) | C1—N1—C9 | 116.7 (2) |
| O3—C8—C3 | 115.3 (2) | C1—N1—Co1ii | 117.72 (17) |
| N1—C9—C10 | 108.2 (2) | C9—N1—Co1ii | 102.74 (17) |
| N1—C9—H9A | 110.1 | C1—N1—H1N | 113.6 |
| C10—C9—H9A | 110.1 | C9—N1—H1N | 102.8 |
| N1—C9—H9B | 110.1 | Co1ii—N1—H1N | 101.1 |
| C10—C9—H9B | 110.1 | C10—N2—C14 | 119.4 (3) |
| H9A—C9—H9B | 108.4 | C10—N2—Co1ii | 115.93 (18) |
| N2—C10—C11 | 121.6 (3) | C14—N2—Co1ii | 124.6 (2) |
| N2—C10—C9 | 116.2 (2) | C7—O1—Co1 | 91.19 (17) |
| C11—C10—C9 | 122.2 (3) | C7—O2—Co1 | 88.71 (16) |
| C12—C11—C10 | 119.0 (3) | C8—O3—Co1iii | 127.34 (17) |
| C12—C11—H11 | 120.5 | Co1—O5—H5WA | 110.0 |
| C10—C11—H11 | 120.5 | Co1—O5—H5W | 108.0 |
| C11—C12—C13 | 119.4 (3) | H5WA—O5—H5W | 103.0 |
| C11—C12—H12 | 120.3 | ||
| C6—C1—C2—C3 | 1.8 (4) | C6—C1—N1—C9 | 153.4 (3) |
| N1—C1—C2—C3 | −176.3 (2) | C2—C1—N1—Co1ii | 94.4 (3) |
| C1—C2—C3—C4 | 0.4 (4) | C6—C1—N1—Co1ii | −83.8 (3) |
| C1—C2—C3—C8 | −179.2 (2) | C10—C9—N1—C1 | 177.6 (2) |
| C2—C3—C4—C5 | −1.7 (4) | C10—C9—N1—Co1ii | 47.3 (3) |
| C8—C3—C4—C5 | 177.9 (2) | C11—C10—N2—C14 | 0.7 (4) |
| C3—C4—C5—C6 | 0.7 (4) | C9—C10—N2—C14 | −179.2 (3) |
| C3—C4—C5—C7 | 179.0 (2) | C11—C10—N2—Co1ii | −176.5 (2) |
| C4—C5—C6—C1 | 1.6 (4) | C9—C10—N2—Co1ii | 3.6 (3) |
| C7—C5—C6—C1 | −176.7 (2) | C13—C14—N2—C10 | −0.5 (5) |
| C2—C1—C6—C5 | −2.8 (4) | C13—C14—N2—Co1ii | 176.4 (3) |
| N1—C1—C6—C5 | 175.4 (2) | O2—C7—O1—Co1 | −3.4 (3) |
| C6—C5—C7—O2 | 149.9 (3) | C5—C7—O1—Co1 | 173.6 (2) |
| C4—C5—C7—O2 | −28.4 (4) | O3i—Co1—O1—C7 | −173.06 (16) |
| C6—C5—C7—O1 | −27.1 (4) | N2ii—Co1—O1—C7 | −22.6 (3) |
| C4—C5—C7—O1 | 154.7 (3) | O5—Co1—O1—C7 | 88.75 (17) |
| C4—C3—C8—O4 | 178.1 (3) | O2—Co1—O1—C7 | 1.93 (15) |
| C2—C3—C8—O4 | −2.3 (4) | N1ii—Co1—O1—C7 | −85.74 (17) |
| C4—C3—C8—O3 | 0.9 (4) | O1—C7—O2—Co1 | 3.3 (3) |
| C2—C3—C8—O3 | −179.5 (2) | C5—C7—O2—Co1 | −173.6 (2) |
| N1—C9—C10—N2 | −37.2 (4) | O3i—Co1—O2—C7 | 11.2 (3) |
| N1—C9—C10—C11 | 142.9 (3) | N2ii—Co1—O2—C7 | 168.46 (17) |
| N2—C10—C11—C12 | −0.3 (5) | O5—Co1—O2—C7 | −95.23 (17) |
| C9—C10—C11—C12 | 179.6 (3) | O1—Co1—O2—C7 | −1.95 (16) |
| C10—C11—C12—C13 | −0.4 (6) | N1ii—Co1—O2—C7 | 92.69 (17) |
| C11—C12—C13—C14 | 0.5 (6) | O4—C8—O3—Co1iii | 9.0 (4) |
| C12—C13—C14—N2 | −0.1 (5) | C3—C8—O3—Co1iii | −174.00 (17) |
| C2—C1—N1—C9 | −28.5 (4) |
| H··· | ||||
| O5—H5WA···O4i | 0.87 | 2.25 | 2.946 (3) | 137. |
| O5—H5WA···O1iv | 0.87 | 2.42 | 3.047 (3) | 130. |
| O5—H5W···O4v | 0.93 | 1.90 | 2.819 (3) | 168. |
Selected bond lengths (Å)
| Co1—O3i | 1.9999 (19) |
| Co1—N2ii | 2.090 (2) |
| Co1—O5 | 2.110 (2) |
| Co1—O1 | 2.132 (2) |
| Co1—O2 | 2.195 (2) |
| Co1—N1ii | 2.275 (2) |
Symmetry codes: (i) ; (ii) .
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O5—H5 | 0.87 | 2.25 | 2.946 (3) | 137 |
| O5—H5 | 0.87 | 2.42 | 3.047 (3) | 130 |
| O5—H5 | 0.93 | 1.90 | 2.819 (3) | 168 |
Symmetry codes: (i) ; (iii) ; (iv) .