Literature DB >> 22199630

Poly[aqua-{μ(3)-5-[(pyridin-2-ylmeth-yl)amino]-isophthalato-κN,N':O,O:O}cobalt(II)].

Xiao-Hong Zhu1, Xiao-Chun Cheng.   

Abstract

In the title polymer, {[Co(C(14)H(10)N(2)O(4))(H(2)O)]·3.5H(2)O}(n), the Co(2+) ion is coordinated by three carboxyl-ate O atoms from two 5-[(pyridin-2-ylmeth-yl)amino]-isophthalate anions, two N atoms from a (pyridin-2-ylmeth-yl)amino group and an O atom from a water mol-ecule, furnishing a distorted CoO(4)N(2) octa-hedral geometry. Each anion acts as a μ(3)-bridge, linking cobalt ions into a two-dimensional layer parallel to (100). The asymmetric unit also contains three and a half solvent water mol-ecules, which could not be modeled. Therefore, the diffraction contribution of the solvent water mol-ecules was removed by the subroutine SQUEEZE in PLATON [Spek (2009). Acta Cryst. D65, 148-155]. The crystal structure is stabilized by O-H⋯O hydrogen bonds in which the coordinated water mol-ecule acts as donor and the carboxyl-ate O atoms as acceptors.

Entities:  

Year:  2011        PMID: 22199630      PMCID: PMC3238753          DOI: 10.1107/S1600536811050318

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Kuai et al. (2011 ▶).

Experimental

Crystal data

[Co(C14H10N2O4)(H2O)]·3.5H2O M = 410.24 Monoclinic, a = 11.0926 (11) Å b = 9.8735 (10) Å c = 17.4317 (15) Å β = 116.533 (5)° V = 1708.1 (3) Å3 Z = 4 Mo Kα radiation μ = 1.05 mm−1 T = 293 K 0.20 × 0.20 × 0.20 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.821, T max = 0.821 11993 measured reflections 4259 independent reflections 3809 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.124 S = 1.11 4259 reflections 199 parameters H-atom parameters constrained Δρmax = 0.81 e Å−3 Δρmin = −0.43 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2000 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811050318/pv2477sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811050318/pv2477Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811050318/pv2477Isup3.cdx Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C14H10N2O4)(H2O)]·3.5H2OF(000) = 846
Mr = 410.24Dx = 1.593 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6314 reflections
a = 11.0926 (11) Åθ = 2.4–28.4°
b = 9.8735 (10) ŵ = 1.05 mm1
c = 17.4317 (15) ÅT = 293 K
β = 116.533 (5)°Block, red
V = 1708.1 (3) Å30.20 × 0.20 × 0.20 mm
Z = 4
Bruker SMART APEXII CCD diffractometer4259 independent reflections
Radiation source: fine-focus sealed tube3809 reflections with I > 2σ(I)
graphiteRint = 0.021
φ and ω scansθmax = 28.4°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −14→12
Tmin = 0.821, Tmax = 0.821k = −13→10
11993 measured reflectionsl = −22→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.124H-atom parameters constrained
S = 1.11w = 1/[σ2(Fo2) + (0.0407P)2 + 3.8921P] where P = (Fo2 + 2Fc2)/3
4259 reflections(Δ/σ)max = 0.001
199 parametersΔρmax = 0.81 e Å3
0 restraintsΔρmin = −0.43 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.8386 (3)0.5358 (3)0.59337 (16)0.0210 (5)
C20.8790 (3)0.5330 (3)0.68135 (17)0.0225 (5)
H20.83440.58580.70480.027*
C30.9868 (3)0.4503 (3)0.73445 (16)0.0217 (5)
C41.0543 (3)0.3722 (3)0.70059 (16)0.0214 (5)
H41.12730.31950.73640.026*
C51.0122 (3)0.3726 (3)0.61166 (16)0.0216 (5)
C60.9043 (3)0.4529 (3)0.55925 (17)0.0231 (5)
H60.87520.45140.50030.028*
C71.0840 (3)0.2913 (3)0.57301 (17)0.0232 (5)
C81.0286 (3)0.4465 (3)0.82983 (17)0.0242 (5)
C90.6291 (3)0.6616 (3)0.55952 (19)0.0291 (6)
H9A0.66850.70560.61510.035*
H9B0.58060.58190.56300.035*
C100.5346 (3)0.7568 (3)0.49261 (18)0.0261 (5)
C110.3962 (3)0.7546 (3)0.4660 (2)0.0375 (7)
H110.35870.69260.48940.045*
C120.3154 (3)0.8459 (4)0.4045 (3)0.0453 (9)
H120.22260.84560.38560.054*
C130.3740 (3)0.9382 (4)0.3709 (2)0.0419 (8)
H130.32161.00100.32970.050*
C140.5124 (3)0.9341 (3)0.4002 (2)0.0333 (6)
H140.55230.99540.37810.040*
Co11.20146 (4)0.17514 (4)0.49770 (2)0.02074 (11)
N10.7352 (2)0.6226 (2)0.53540 (15)0.0239 (5)
H1N0.68760.58620.48220.029*
N20.5908 (2)0.8448 (2)0.45967 (15)0.0243 (5)
O11.0210 (2)0.2537 (2)0.49556 (13)0.0298 (4)
O21.2068 (2)0.2644 (2)0.61450 (14)0.0318 (5)
O31.1274 (2)0.3701 (2)0.87308 (12)0.0270 (4)
O40.9694 (3)0.5200 (3)0.86000 (15)0.0454 (6)
O51.1716 (2)−0.0155 (2)0.54116 (15)0.0337 (5)
H5WA1.1069−0.05870.49950.040*
H5W1.1367−0.00120.57990.040*
U11U22U33U12U13U23
C10.0250 (12)0.0200 (12)0.0202 (12)0.0001 (10)0.0119 (10)0.0011 (9)
C20.0271 (13)0.0227 (12)0.0222 (12)0.0027 (10)0.0151 (10)0.0014 (10)
C30.0277 (13)0.0225 (12)0.0175 (11)−0.0013 (10)0.0123 (10)−0.0010 (9)
C40.0258 (12)0.0208 (12)0.0190 (11)0.0020 (10)0.0113 (10)0.0015 (9)
C50.0289 (13)0.0210 (12)0.0196 (12)−0.0015 (10)0.0150 (10)−0.0012 (9)
C60.0297 (13)0.0236 (12)0.0182 (11)−0.0003 (10)0.0127 (10)−0.0004 (10)
C70.0330 (14)0.0202 (12)0.0232 (12)0.0004 (10)0.0187 (11)0.0002 (10)
C80.0338 (14)0.0241 (13)0.0202 (12)−0.0003 (11)0.0170 (11)0.0002 (10)
C90.0282 (14)0.0330 (15)0.0322 (15)0.0032 (12)0.0188 (12)0.0063 (12)
C100.0263 (13)0.0258 (13)0.0275 (13)0.0020 (11)0.0133 (11)−0.0011 (11)
C110.0260 (14)0.0339 (16)0.051 (2)−0.0013 (12)0.0157 (14)0.0028 (14)
C120.0244 (15)0.0425 (19)0.064 (2)0.0062 (14)0.0155 (15)0.0073 (17)
C130.0323 (16)0.0419 (18)0.0445 (19)0.0135 (14)0.0110 (14)0.0100 (15)
C140.0347 (15)0.0333 (15)0.0318 (15)0.0097 (13)0.0149 (13)0.0072 (12)
Co10.02195 (19)0.0267 (2)0.01563 (17)0.00285 (14)0.01024 (13)0.00087 (13)
N10.0257 (11)0.0274 (11)0.0203 (10)0.0046 (9)0.0117 (9)0.0020 (9)
N20.0241 (11)0.0259 (11)0.0234 (11)0.0032 (9)0.0110 (9)0.0016 (9)
O10.0366 (11)0.0365 (11)0.0191 (9)0.0087 (9)0.0150 (8)−0.0012 (8)
O20.0298 (10)0.0399 (12)0.0307 (11)−0.0009 (9)0.0179 (9)−0.0085 (9)
O30.0306 (10)0.0348 (11)0.0181 (9)0.0023 (9)0.0131 (8)0.0022 (8)
O40.0668 (16)0.0505 (15)0.0279 (11)0.0300 (13)0.0293 (12)0.0095 (10)
O50.0338 (11)0.0296 (11)0.0398 (12)−0.0010 (9)0.0183 (10)0.0026 (9)
C1—C21.393 (4)C10—C111.391 (4)
C1—C61.394 (4)C11—C121.381 (5)
C1—N11.427 (3)C11—H110.9300
C2—C31.402 (4)C12—C131.392 (5)
C2—H20.9300C12—H120.9300
C3—C41.377 (4)C13—C141.384 (5)
C3—C81.514 (3)C13—H130.9300
C4—C51.405 (3)C14—N21.343 (4)
C4—H40.9300C14—H140.9300
C5—C61.385 (4)Co1—O3i1.9999 (19)
C5—C71.488 (3)Co1—N2ii2.090 (2)
C6—H60.9300Co1—O52.110 (2)
C7—O21.252 (4)Co1—O12.132 (2)
C7—O11.267 (3)Co1—O22.195 (2)
C8—O41.242 (3)Co1—N1ii2.275 (2)
C8—O31.265 (3)N1—Co1ii2.275 (2)
C9—N11.468 (3)N1—H1N0.9118
C9—C101.500 (4)N2—Co1ii2.090 (2)
C9—H9A0.9700O3—Co1iii1.9999 (19)
C9—H9B0.9700O5—H5WA0.8710
C10—N21.339 (4)O5—H5W0.9279
C2—C1—C6119.1 (2)C13—C12—H12120.3
C2—C1—N1123.6 (2)C14—C13—C12118.3 (3)
C6—C1—N1117.3 (2)C14—C13—H13120.8
C1—C2—C3119.9 (2)C12—C13—H13120.8
C1—C2—H2120.1N2—C14—C13122.3 (3)
C3—C2—H2120.1N2—C14—H14118.9
C4—C3—C2120.7 (2)C13—C14—H14118.9
C4—C3—C8119.9 (2)O3i—Co1—N2ii102.58 (9)
C2—C3—C8119.4 (2)O3i—Co1—O597.84 (9)
C3—C4—C5119.6 (2)N2ii—Co1—O596.50 (9)
C3—C4—H4120.2O3i—Co1—O197.79 (8)
C5—C4—H4120.2N2ii—Co1—O1156.61 (9)
C6—C5—C4119.5 (2)O5—Co1—O191.96 (8)
C6—C5—C7119.3 (2)O3i—Co1—O2157.69 (8)
C4—C5—C7121.1 (2)N2ii—Co1—O298.01 (9)
C5—C6—C1121.1 (2)O5—Co1—O288.21 (9)
C5—C6—H6119.4O1—Co1—O260.40 (8)
C1—C6—H6119.4O3i—Co1—N1ii86.81 (8)
O2—C7—O1119.6 (2)N2ii—Co1—N1ii75.91 (9)
O2—C7—C5121.1 (2)O5—Co1—N1ii171.88 (9)
O1—C7—C5119.2 (2)O1—Co1—N1ii94.02 (8)
O4—C8—O3125.3 (3)O2—Co1—N1ii89.96 (8)
O4—C8—C3119.4 (3)C1—N1—C9116.7 (2)
O3—C8—C3115.3 (2)C1—N1—Co1ii117.72 (17)
N1—C9—C10108.2 (2)C9—N1—Co1ii102.74 (17)
N1—C9—H9A110.1C1—N1—H1N113.6
C10—C9—H9A110.1C9—N1—H1N102.8
N1—C9—H9B110.1Co1ii—N1—H1N101.1
C10—C9—H9B110.1C10—N2—C14119.4 (3)
H9A—C9—H9B108.4C10—N2—Co1ii115.93 (18)
N2—C10—C11121.6 (3)C14—N2—Co1ii124.6 (2)
N2—C10—C9116.2 (2)C7—O1—Co191.19 (17)
C11—C10—C9122.2 (3)C7—O2—Co188.71 (16)
C12—C11—C10119.0 (3)C8—O3—Co1iii127.34 (17)
C12—C11—H11120.5Co1—O5—H5WA110.0
C10—C11—H11120.5Co1—O5—H5W108.0
C11—C12—C13119.4 (3)H5WA—O5—H5W103.0
C11—C12—H12120.3
C6—C1—C2—C31.8 (4)C6—C1—N1—C9153.4 (3)
N1—C1—C2—C3−176.3 (2)C2—C1—N1—Co1ii94.4 (3)
C1—C2—C3—C40.4 (4)C6—C1—N1—Co1ii−83.8 (3)
C1—C2—C3—C8−179.2 (2)C10—C9—N1—C1177.6 (2)
C2—C3—C4—C5−1.7 (4)C10—C9—N1—Co1ii47.3 (3)
C8—C3—C4—C5177.9 (2)C11—C10—N2—C140.7 (4)
C3—C4—C5—C60.7 (4)C9—C10—N2—C14−179.2 (3)
C3—C4—C5—C7179.0 (2)C11—C10—N2—Co1ii−176.5 (2)
C4—C5—C6—C11.6 (4)C9—C10—N2—Co1ii3.6 (3)
C7—C5—C6—C1−176.7 (2)C13—C14—N2—C10−0.5 (5)
C2—C1—C6—C5−2.8 (4)C13—C14—N2—Co1ii176.4 (3)
N1—C1—C6—C5175.4 (2)O2—C7—O1—Co1−3.4 (3)
C6—C5—C7—O2149.9 (3)C5—C7—O1—Co1173.6 (2)
C4—C5—C7—O2−28.4 (4)O3i—Co1—O1—C7−173.06 (16)
C6—C5—C7—O1−27.1 (4)N2ii—Co1—O1—C7−22.6 (3)
C4—C5—C7—O1154.7 (3)O5—Co1—O1—C788.75 (17)
C4—C3—C8—O4178.1 (3)O2—Co1—O1—C71.93 (15)
C2—C3—C8—O4−2.3 (4)N1ii—Co1—O1—C7−85.74 (17)
C4—C3—C8—O30.9 (4)O1—C7—O2—Co13.3 (3)
C2—C3—C8—O3−179.5 (2)C5—C7—O2—Co1−173.6 (2)
N1—C9—C10—N2−37.2 (4)O3i—Co1—O2—C711.2 (3)
N1—C9—C10—C11142.9 (3)N2ii—Co1—O2—C7168.46 (17)
N2—C10—C11—C12−0.3 (5)O5—Co1—O2—C7−95.23 (17)
C9—C10—C11—C12179.6 (3)O1—Co1—O2—C7−1.95 (16)
C10—C11—C12—C13−0.4 (6)N1ii—Co1—O2—C792.69 (17)
C11—C12—C13—C140.5 (6)O4—C8—O3—Co1iii9.0 (4)
C12—C13—C14—N2−0.1 (5)C3—C8—O3—Co1iii−174.00 (17)
C2—C1—N1—C9−28.5 (4)
D—H···AD—HH···AD···AD—H···A
O5—H5WA···O4i0.872.252.946 (3)137.
O5—H5WA···O1iv0.872.423.047 (3)130.
O5—H5W···O4v0.931.902.819 (3)168.
Table 1

Selected bond lengths (Å)

Co1—O3i1.9999 (19)
Co1—N2ii2.090 (2)
Co1—O52.110 (2)
Co1—O12.132 (2)
Co1—O22.195 (2)
Co1—N1ii2.275 (2)

Symmetry codes: (i) ; (ii) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H5WA⋯O4i0.872.252.946 (3)137
O5—H5WA⋯O1iii0.872.423.047 (3)130
O5—H5W⋯O4iv0.931.902.819 (3)168

Symmetry codes: (i) ; (iii) ; (iv) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
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