Literature DB >> 22199540

catena-Poly[[[(acetato-κO,O')cadmium]-μ-acetato-κO,O':O'-μ-{1,2-bis-[4-(pyridin-3-yl)pyrimidin-2-ylsulfan-yl]ethane}-κN,N] trihydrate].

Hua-Ze Dong, Zhao-Lian Chu.   

Abstract

The title compound, {[Cd(CH(3)COO)(2)(C(20)H(16)N(6)S(2))]·3H(2)O}(n), exists as a one-dimensional zigzag polymer in which the Cd(II) ion shows a seven-coordinate [CdO(5)N(2)] distorted penta-gonal-bipyramidal geometry with the N atoms in axial positions and an N-Cd-N angle of 176.94 (13)°. The metal atoms are bridged by 1,2-bis-[4-(pyridin-3-yl)pyrimidin-2-ylsulfan-yl]ethane ligands, giving a polymeric chain extending along the b axis. Adjacent chains related by an inversion center are further bridged by Cd-O bonds formed between the O atom of one of the acetate ligands and the metal atom. The five Cd-O bond lengths are in the range 2.329 (3)-2.485 (3) Å. There are π-π stacking inter-actions between the aromatic rings of adjacent polymeric chains, the centroid-centroid distances being 3.556 (3) and 3.698 (3) Å, organizing the chains into a three-dimensional framework. This framework is additionally stabilized by extensive O-H⋯O and O-H⋯N hydrogen bonding between water mol-ecules and the ligands.

Entities:  

Year:  2011        PMID: 22199540      PMCID: PMC3238649          DOI: 10.1107/S1600536811046794

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For backgroud to coordination polymers with thio­ether ligands, see: Dong, Yang et al. (2008 ▶); Dong, Zhu et al. (2008 ▶); Dong et al. (2009 ▶).

Experimental

Crystal data

[Cd(C2H3O2)2(C20H16N6S2)]·3H2O M = 689.07 Monoclinic, a = 10.8000 (12) Å b = 14.0816 (16) Å c = 18.594 (2) Å β = 95.997 (2)° V = 2812.4 (5) Å3 Z = 4 Mo Kα radiation μ = 0.98 mm−1 T = 291 K 0.20 × 0.10 × 0.03 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.822, T max = 0.971 14681 measured reflections 5492 independent reflections 3846 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.112 S = 1.01 5492 reflections 363 parameters H-atom parameters constrained Δρmax = 0.84 e Å−3 Δρmin = −0.77 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811046794/gk2423sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811046794/gk2423Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cd(C2H3O2)2(C20H16N6S2)]·3H2OF(000) = 1400
Mr = 689Dx = 1.628 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3846 reflections
a = 10.8000 (12) Åθ = 1.8–25.2°
b = 14.0816 (16) ŵ = 0.98 mm1
c = 18.594 (2) ÅT = 291 K
β = 95.997 (2)°Plate, colorless
V = 2812.4 (5) Å30.20 × 0.10 × 0.03 mm
Z = 4
Bruker SMART CCD area-detector diffractometer5492 independent reflections
Radiation source: fine-focus sealed tube3846 reflections with I > 2σ(I)
graphiteRint = 0.048
φ and ω scanθmax = 26.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −7→13
Tmin = 0.822, Tmax = 0.971k = −16→17
14681 measured reflectionsl = −22→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.112H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0473P)2] where P = (Fo2 + 2Fc2)/3
5492 reflections(Δ/σ)max = 0.005
363 parametersΔρmax = 0.84 e Å3
0 restraintsΔρmin = −0.77 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.6658 (4)0.8014 (4)−0.1567 (3)0.0429 (13)
C20.7246 (5)0.7596 (4)−0.2185 (3)0.0683 (18)
H2A0.81330.7580−0.20710.103*
H2B0.70410.7976−0.26090.103*
H2C0.69410.6961−0.22730.103*
C30.5891 (4)1.1395 (4)−0.0653 (2)0.0363 (12)
C40.6550 (6)1.1502 (5)−0.1300 (3)0.075 (2)
H4A0.66461.2165−0.14020.112*
H4B0.60781.1202−0.17040.112*
H4C0.73551.1210−0.12180.112*
C50.6748 (5)0.8859 (3)0.3150 (2)0.0389 (12)
C60.8781 (6)0.8792 (4)0.3511 (3)0.0592 (16)
H60.94370.87670.38760.071*
C70.9059 (5)0.8780 (4)0.2821 (3)0.0532 (15)
H70.98790.87520.27130.064*
C80.8070 (5)0.8813 (3)0.2277 (2)0.0363 (11)
C90.8240 (4)0.8842 (3)0.1498 (2)0.0343 (11)
C100.9383 (5)0.8957 (3)0.1249 (3)0.0426 (12)
H101.01030.89850.15700.051*
C110.9446 (5)0.9032 (4)0.0512 (3)0.0472 (14)
H111.02120.90990.03310.057*
C120.8387 (5)0.9007 (3)0.0058 (3)0.0417 (13)
H120.84410.9079−0.04350.050*
C130.7214 (4)0.8809 (3)0.0997 (2)0.0342 (11)
H130.64380.87310.11630.041*
C140.5271 (5)0.9099 (4)0.4283 (2)0.0456 (14)
H14A0.59580.95200.44390.055*
H14B0.45110.93990.44040.055*
H24A0.47480.77580.45560.055*
H24B0.61950.78610.45660.055*
C150.4022 (5)0.8463 (3)0.5830 (2)0.0393 (12)
C160.1985 (5)0.8570 (4)0.5474 (3)0.0536 (15)
H160.13240.85660.51110.064*
C170.1719 (5)0.8667 (3)0.6172 (3)0.0470 (14)
H170.09070.87460.62860.056*
C180.2728 (5)0.8643 (3)0.6708 (2)0.0349 (12)
C190.2573 (5)0.8719 (3)0.7486 (2)0.0357 (12)
C200.1445 (5)0.8667 (3)0.7764 (3)0.0393 (13)
H200.07130.85980.74570.047*
C210.1409 (5)0.8719 (3)0.8492 (3)0.0447 (13)
H210.06500.86880.86850.054*
C220.2486 (5)0.8814 (3)0.8939 (3)0.0397 (12)
H220.24410.88340.94360.048*
C230.3635 (5)0.8826 (3)0.7981 (2)0.0367 (11)
H230.44070.88620.78020.044*
C240.5447 (5)0.8173 (4)0.4694 (3)0.0509 (15)
Cd10.54604 (3)0.88993 (3)−0.053496 (16)0.03387 (13)
N10.6904 (4)0.8839 (3)0.24501 (19)0.0355 (9)
N20.7636 (4)0.8836 (3)0.3705 (2)0.0456 (11)
N30.7268 (4)0.8883 (3)0.0283 (2)0.0384 (9)
N40.3887 (4)0.8531 (3)0.6531 (2)0.0395 (10)
N50.3119 (4)0.8480 (3)0.5283 (2)0.0511 (12)
N60.3595 (4)0.8880 (3)0.86954 (19)0.0362 (9)
O10.6169 (3)0.7495 (2)−0.11385 (17)0.0490 (9)
O20.6649 (3)0.8906 (3)−0.15103 (17)0.0493 (9)
O30.5654 (3)1.0578 (2)−0.04314 (15)0.0430 (8)
O40.5594 (3)1.2110 (3)−0.03123 (17)0.0508 (9)
O50.3481 (4)0.5134 (3)0.2749 (2)0.0912 (15)
H5A0.32040.51680.23050.137*
H5B0.29280.53970.29740.137*
O60.3059 (5)0.4610 (4)0.1302 (2)0.1181 (18)
H6OA0.33200.50000.10020.177*
H6OB0.32130.40250.11840.177*
O70.3543 (4)0.6001 (3)0.0280 (2)0.0916 (15)
H7OB0.33120.5997−0.01730.137*
H7OA0.37420.65750.03800.137*
S10.51853 (13)0.89534 (11)0.33124 (7)0.0523 (4)
S20.55806 (13)0.83446 (11)0.56618 (7)0.0501 (4)
U11U22U33U12U13U23
C10.032 (3)0.067 (4)0.030 (3)0.008 (3)0.001 (2)−0.010 (3)
C20.075 (5)0.072 (5)0.064 (4)−0.003 (3)0.034 (3)−0.019 (3)
C30.035 (3)0.049 (4)0.024 (2)−0.008 (2)0.003 (2)0.004 (2)
C40.095 (5)0.095 (5)0.039 (3)−0.021 (4)0.029 (3)−0.002 (3)
C50.048 (3)0.033 (3)0.035 (3)−0.004 (2)0.001 (2)0.004 (2)
C60.054 (4)0.083 (5)0.037 (3)0.013 (3)−0.011 (3)−0.001 (3)
C70.041 (3)0.079 (4)0.039 (3)0.009 (3)0.000 (2)0.004 (3)
C80.044 (3)0.029 (3)0.036 (3)0.001 (2)0.005 (2)0.003 (2)
C90.036 (3)0.029 (3)0.038 (3)0.001 (2)0.003 (2)0.003 (2)
C100.036 (3)0.046 (3)0.044 (3)0.001 (3)−0.003 (2)0.000 (3)
C110.033 (3)0.062 (4)0.048 (3)−0.005 (3)0.012 (2)0.002 (3)
C120.049 (3)0.046 (3)0.032 (3)−0.003 (3)0.010 (2)0.000 (2)
C130.031 (3)0.039 (3)0.033 (3)−0.001 (2)0.005 (2)0.007 (2)
C140.056 (4)0.051 (4)0.031 (3)0.000 (3)0.012 (2)−0.004 (2)
C150.054 (4)0.035 (3)0.030 (3)−0.010 (2)0.005 (2)0.000 (2)
C160.049 (4)0.070 (4)0.038 (3)−0.016 (3)−0.011 (3)0.001 (3)
C170.044 (3)0.061 (4)0.034 (3)−0.007 (3)−0.006 (2)0.006 (2)
C180.045 (3)0.027 (3)0.032 (3)−0.004 (2)0.001 (2)−0.0037 (19)
C190.045 (3)0.029 (3)0.032 (2)−0.001 (2)−0.002 (2)−0.003 (2)
C200.035 (3)0.037 (3)0.044 (3)−0.005 (2)−0.002 (2)0.000 (2)
C210.040 (3)0.049 (4)0.047 (3)−0.007 (2)0.011 (3)−0.004 (2)
C220.048 (3)0.041 (3)0.031 (3)−0.002 (3)0.006 (2)−0.001 (2)
C230.042 (3)0.037 (3)0.032 (3)0.004 (2)0.012 (2)0.007 (2)
C240.076 (4)0.046 (4)0.034 (3)−0.010 (3)0.022 (3)−0.005 (2)
Cd10.0364 (2)0.0440 (2)0.02189 (17)−0.00100 (18)0.00639 (13)−0.00316 (16)
N10.035 (3)0.042 (2)0.029 (2)−0.002 (2)−0.0005 (17)0.0064 (18)
N20.049 (3)0.057 (3)0.030 (2)0.005 (2)−0.002 (2)0.003 (2)
N30.038 (3)0.043 (2)0.035 (2)0.000 (2)0.0084 (18)0.0018 (19)
N40.050 (3)0.039 (3)0.030 (2)−0.005 (2)0.003 (2)−0.0017 (18)
N50.054 (3)0.065 (3)0.032 (2)−0.015 (2)−0.005 (2)0.002 (2)
N60.039 (3)0.040 (2)0.030 (2)0.001 (2)0.0054 (18)−0.0010 (19)
O10.056 (3)0.058 (3)0.0340 (19)−0.0056 (18)0.0105 (17)−0.0006 (17)
O20.061 (3)0.050 (2)0.041 (2)0.000 (2)0.0203 (17)−0.0083 (18)
O30.057 (2)0.039 (2)0.0349 (19)−0.0042 (17)0.0126 (16)0.0034 (15)
O40.065 (3)0.042 (2)0.046 (2)−0.0009 (18)0.0081 (18)−0.0023 (17)
O50.076 (3)0.116 (4)0.081 (3)0.039 (3)0.008 (2)0.000 (3)
O60.151 (5)0.115 (5)0.090 (4)0.020 (4)0.022 (3)0.005 (3)
O70.112 (4)0.099 (4)0.062 (3)−0.025 (3)0.006 (3)0.004 (2)
S10.0456 (9)0.0780 (11)0.0339 (7)−0.0040 (8)0.0078 (6)0.0002 (7)
S20.0574 (10)0.0584 (9)0.0354 (7)−0.0007 (7)0.0094 (6)0.0021 (6)
C1—O11.239 (6)C15—S21.752 (5)
C1—O21.260 (6)C16—N51.317 (6)
C1—C21.492 (6)C16—C171.365 (7)
C2—H2A0.9600C16—H160.9300
C2—H2B0.9600C17—C181.398 (6)
C2—H2C0.9600C17—H170.9300
C3—O41.249 (6)C18—N41.336 (6)
C3—O31.259 (6)C18—C191.478 (6)
C3—C41.468 (7)C19—C201.373 (7)
C4—H4A0.9600C19—C231.401 (6)
C4—H4B0.9600C20—C211.361 (6)
C4—H4C0.9600C20—H200.9300
C5—N11.330 (5)C21—C221.363 (6)
C5—N21.333 (6)C21—H210.9300
C5—S11.750 (5)C22—N61.328 (6)
C6—N21.324 (7)C22—H220.9300
C6—C71.347 (7)C23—N61.336 (5)
C6—H60.9300C23—H230.9300
C7—C81.393 (6)C24—S21.806 (5)
C7—H70.9300C24—H24A0.9679
C8—N11.333 (6)C24—H24B0.9703
C8—C91.480 (6)Cd1—O22.329 (3)
C9—C131.372 (6)Cd1—N32.346 (4)
C9—C101.373 (6)Cd1—N6i2.346 (4)
C10—C111.382 (6)Cd1—O32.378 (3)
C10—H100.9300Cd1—O3ii2.382 (3)
C11—C121.350 (6)Cd1—O12.437 (3)
C11—H110.9300Cd1—O4ii2.485 (3)
C12—N31.331 (6)N6—Cd1iii2.346 (4)
C12—H120.9300O3—Cd1ii2.382 (3)
C13—N31.340 (5)O4—Cd1ii2.485 (3)
C13—H130.9300O5—H5A0.8500
C14—C241.514 (7)O5—H5B0.8500
C14—S11.810 (4)O6—H6OA0.8520
C14—H14A0.9700O6—H6OB0.8735
C14—H14B0.9700O7—H7OB0.8519
C15—N41.329 (5)O7—H7OA0.8528
C15—N51.334 (6)
O1—C1—O2121.8 (5)C20—C19—C23117.2 (4)
O1—C1—C2120.4 (5)C20—C19—C18124.0 (4)
O2—C1—C2117.8 (5)C23—C19—C18118.7 (5)
C1—C2—H2A109.5C21—C20—C19119.3 (5)
C1—C2—H2B109.5C21—C20—H20120.4
H2A—C2—H2B109.5C19—C20—H20120.4
C1—C2—H2C109.5C20—C21—C22120.1 (5)
H2A—C2—H2C109.5C20—C21—H21120.0
H2B—C2—H2C109.5C22—C21—H21120.0
O4—C3—O3119.9 (4)N6—C22—C21122.8 (4)
O4—C3—C4120.4 (5)N6—C22—H22118.6
O3—C3—C4119.7 (5)C21—C22—H22118.6
C3—C4—H4A109.5N6—C23—C19123.3 (4)
C3—C4—H4B109.5N6—C23—H23118.3
H4A—C4—H4B109.5C19—C23—H23118.3
C3—C4—H4C109.5C14—C24—S2112.3 (4)
H4A—C4—H4C109.5C14—C24—H24A109.4
H4B—C4—H4C109.5S2—C24—H24A108.9
N1—C5—N2127.0 (5)C14—C24—H24B109.2
N1—C5—S1113.2 (3)S2—C24—H24B108.9
N2—C5—S1119.9 (4)H24A—C24—H24B108.0
N2—C6—C7124.5 (5)O2—Cd1—N390.92 (13)
N2—C6—H6117.7O2—Cd1—N6i91.89 (12)
C7—C6—H6117.7N3—Cd1—N6i176.94 (13)
C6—C7—C8117.4 (5)O2—Cd1—O390.46 (12)
C6—C7—H7121.3N3—Cd1—O384.09 (12)
C8—C7—H7121.3N6i—Cd1—O397.09 (12)
N1—C8—C7119.8 (4)O2—Cd1—O3ii161.70 (12)
N1—C8—C9116.9 (4)N3—Cd1—O3ii88.04 (12)
C7—C8—C9123.2 (5)N6i—Cd1—O3ii89.68 (12)
C13—C9—C10117.8 (4)O3—Cd1—O3ii71.26 (12)
C13—C9—C8119.3 (4)O2—Cd1—O154.50 (11)
C10—C9—C8122.8 (4)N3—Cd1—O190.60 (12)
C9—C10—C11118.8 (4)N6i—Cd1—O190.04 (12)
C9—C10—H10120.6O3—Cd1—O1144.54 (11)
C11—C10—H10120.6O3ii—Cd1—O1143.75 (11)
C12—C11—C10119.5 (5)O2—Cd1—O4ii145.35 (12)
C12—C11—H11120.3N3—Cd1—O4ii89.36 (12)
C10—C11—H11120.3N6i—Cd1—O4ii87.65 (12)
N3—C12—C11123.0 (5)O3—Cd1—O4ii124.00 (11)
N3—C12—H12118.5O3ii—Cd1—O4ii52.93 (12)
C11—C12—H12118.5O1—Cd1—O4ii90.85 (12)
N3—C13—C9123.7 (4)C5—N1—C8117.2 (4)
N3—C13—H13118.1C6—N2—C5114.1 (4)
C9—C13—H13118.1C12—N3—C13117.1 (4)
C24—C14—S1113.4 (4)C12—N3—Cd1121.1 (3)
C24—C14—H14A108.9C13—N3—Cd1121.6 (3)
S1—C14—H14A108.9C15—N4—C18116.9 (4)
C24—C14—H14B108.9C16—N5—C15114.9 (4)
S1—C14—H14B108.9C22—N6—C23117.3 (4)
H14A—C14—H14B107.7C22—N6—Cd1iii122.7 (3)
N4—C15—N5126.9 (5)C23—N6—Cd1iii119.5 (3)
N4—C15—S2112.8 (4)C1—O1—Cd189.5 (3)
N5—C15—S2120.3 (4)C1—O2—Cd194.0 (3)
N5—C16—C17124.1 (5)C3—O3—Cd1154.4 (3)
N5—C16—H16118.0C3—O3—Cd1ii95.8 (3)
C17—C16—H16118.0Cd1—O3—Cd1ii108.74 (12)
C16—C17—C18116.7 (5)C3—O4—Cd1ii91.2 (3)
C16—C17—H17121.6H5A—O5—H5B105.1
C18—C17—H17121.6H6OA—O6—H6OB111.0
N4—C18—C17120.5 (5)H7OB—O7—H7OA105.3
N4—C18—C19117.1 (4)C5—S1—C14103.4 (2)
C17—C18—C19122.4 (5)C15—S2—C24102.3 (2)
D—H···AD—HH···AD···AD—H···A
O6—H6OB···O1iv0.872.243.102 (6)167
O7—H7OB···N2v0.852.153.000 (5)173
O7—H7OA···O4ii0.852.002.819 (6)162
O5—H5A···O60.852.012.782 (5)150
O5—H5B···O2vi0.852.022.864 (5)177
C6—H6···O1vii0.932.583.163 (7)121
C10—H10···O5viii0.932.483.263 (7)142
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O6—H6OB⋯O1i0.872.243.102 (6)167
O7—H7OB⋯N2ii0.852.153.000 (5)173
O7—H7OA⋯O4iii0.852.002.819 (6)162
O5—H5A⋯O60.852.012.782 (5)150
O5—H5B⋯O2iv0.852.022.864 (5)177

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Anion-modulated reversible conversion of molecular assembly between a macrocycle and a linear chain.

Authors:  Huaze Dong; Juan Yang; Xia Liu; Shaohua Gou
Journal:  Inorg Chem       Date:  2008-04-21       Impact factor: 5.165

  2 in total

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