Literature DB >> 22199511

Diaqua-bis-(dihydrogen 3-aza-niumyl-1-hy-droxy-propyl-idene-1,1-di-phos-phon-ato-κO,O')cobalt(II).

Natalia V Tsaryk1, Anatolij V Dudko, Alexandra N Kozachkova, Vasily I Pekhnyo.   

Abstract

The asymmetric unit of title compound, [Co(C(3)H(10)NO(7)P(2))(2)(H(2)O)(2)], contains one half-mol-ecule of the complex. The Co(II) atom is located on an inversion centre and displays a distorted octa-hedral coordination geometry defined by four O atoms of two 3-aza-niumyl-1-hy-droxy-propyl-idene-1,1-bis-phospho-nato ligands in the equatorial plane and two water mol-ecules located in axial positions. The ligand mol-ecules, which exist in a zwitterionic state, form two six-membered chelate rings with chair conformations. In the crystal, mol-ecules are inter-linked by O-H⋯O and N-H⋯O hydrogen bonds, forming a three-dimensional supra-molecular structure.

Entities:  

Year:  2011        PMID: 22199511      PMCID: PMC3238620          DOI: 10.1107/S1600536811045120

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to organic diphospho­nic acids and their applications, see: Matczak-Jon & Videnova-Adrabinska (2005 ▶). For applications of bis­phospho­nate metal complexes in medicine, see: Matkovskaya et al. (2001 ▶). For a related structure, see: Bon et al. (2010 ▶). For bond-length data, see: Allen et al. (2004 ▶).

Experimental

Crystal data

[Co(C3H10NO7P2)2(H2O)2] M = 563.08 Monoclinic, a = 7.3292 (2) Å b = 10.8172 (3) Å c = 12.6403 (3) Å β = 120.801 (1)° V = 860.79 (4) Å3 Z = 2 Mo Kα radiation μ = 1.46 mm−1 T = 100 K 0.50 × 0.25 × 0.15 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.528, T max = 0.811 6688 measured reflections 2613 independent reflections 2273 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.080 S = 1.04 2613 reflections 157 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.70 e Å−3 Δρmin = −0.41 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2010 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811045120/ez2263sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811045120/ez2263Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C3H10NO7P2)2(H2O)2]F(000) = 578
Mr = 563.08Dx = 2.172 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3543 reflections
a = 7.3292 (2) Åθ = 2.7–30.6°
b = 10.8172 (3) ŵ = 1.46 mm1
c = 12.6403 (3) ÅT = 100 K
β = 120.801 (1)°Block, pink
V = 860.79 (4) Å30.50 × 0.25 × 0.15 mm
Z = 2
Bruker APEXII CCD diffractometer2613 independent reflections
Radiation source: fine-focus sealed tube2273 reflections with I > 2σ(I)
graphiteRint = 0.020
φ and ω scansθmax = 30.6°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −10→9
Tmin = 0.528, Tmax = 0.811k = −12→15
6688 measured reflectionsl = −18→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.080H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0452P)2 + 0.4224P] where P = (Fo2 + 2Fc2)/3
2613 reflections(Δ/σ)max = 0.003
157 parametersΔρmax = 0.70 e Å3
1 restraintΔρmin = −0.41 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.00000.50000.00000.01045 (9)
P10.25936 (6)0.70145 (4)−0.05843 (4)0.00902 (10)
P2−0.12574 (6)0.58120 (4)−0.28208 (4)0.00964 (10)
O10.1630 (2)0.72770 (13)−0.29229 (12)0.0156 (3)
H1O0.127 (4)0.802 (3)−0.289 (2)0.023*
O20.25165 (18)0.60515 (12)0.02492 (11)0.0124 (2)
O30.1139 (2)0.81197 (12)−0.07370 (12)0.0145 (3)
H3O0.154 (4)0.874 (3)−0.079 (2)0.022*
O40.48210 (18)0.74524 (13)−0.01964 (11)0.0137 (3)
O5−0.1323 (2)0.49001 (12)−0.19349 (11)0.0143 (3)
O6−0.2632 (2)0.69798 (12)−0.29892 (12)0.0151 (3)
H6O−0.334 (4)0.712 (2)−0.365 (2)0.023*
O7−0.1968 (2)0.52889 (12)−0.40857 (11)0.0137 (3)
O80.1663 (2)0.33228 (13)0.02254 (13)0.0158 (3)
H810.270 (4)0.320 (2)0.007 (2)0.024*
H820.082 (4)0.283 (2)−0.014 (2)0.024*
N10.4212 (3)0.38826 (17)−0.30480 (17)0.0192 (3)
H2N0.356 (4)0.323 (3)−0.297 (2)0.029*
H3N0.553 (5)0.394 (2)−0.237 (3)0.029*
H1N0.439 (4)0.383 (3)−0.3675 (19)0.029*
C10.1504 (2)0.63551 (16)−0.21320 (15)0.0108 (3)
C20.2914 (3)0.52507 (17)−0.20331 (16)0.0140 (3)
H2A0.43700.5391−0.13300.017*
H2B0.23570.4493−0.18580.017*
C30.3018 (3)0.50443 (17)−0.31959 (18)0.0164 (4)
H3A0.15650.4980−0.39220.020*
H3B0.37430.5750−0.33250.020*
U11U22U33U12U13U23
Co10.01100 (15)0.00938 (17)0.00988 (16)−0.00047 (11)0.00457 (12)0.00097 (12)
P10.00920 (18)0.0085 (2)0.00885 (19)−0.00167 (14)0.00423 (15)−0.00129 (15)
P20.01040 (19)0.0090 (2)0.00774 (18)−0.00077 (14)0.00333 (15)−0.00018 (15)
O10.0225 (6)0.0115 (6)0.0157 (6)0.0003 (5)0.0118 (5)0.0027 (5)
O20.0120 (5)0.0124 (6)0.0107 (5)−0.0017 (4)0.0042 (4)0.0020 (5)
O30.0171 (6)0.0076 (6)0.0190 (6)−0.0005 (5)0.0094 (5)−0.0013 (5)
O40.0110 (5)0.0168 (7)0.0133 (6)−0.0049 (4)0.0063 (5)−0.0040 (5)
O50.0163 (6)0.0141 (6)0.0103 (6)−0.0043 (5)0.0052 (5)0.0014 (5)
O60.0148 (6)0.0147 (6)0.0109 (6)0.0051 (5)0.0031 (5)0.0004 (5)
O70.0162 (6)0.0125 (6)0.0092 (5)−0.0015 (5)0.0041 (5)−0.0030 (5)
O80.0139 (6)0.0134 (6)0.0210 (6)−0.0007 (5)0.0096 (5)−0.0009 (5)
N10.0186 (7)0.0182 (8)0.0237 (8)−0.0020 (6)0.0129 (7)−0.0071 (7)
C10.0114 (7)0.0099 (8)0.0103 (7)−0.0005 (6)0.0050 (6)0.0001 (6)
C20.0155 (7)0.0125 (8)0.0125 (7)0.0038 (6)0.0061 (6)−0.0007 (7)
C30.0181 (8)0.0156 (9)0.0180 (9)0.0017 (6)0.0111 (7)−0.0008 (7)
Co1—O2i2.0494 (12)O1—H1O0.85 (3)
Co1—O22.0494 (12)O3—H3O0.76 (3)
Co1—O8i2.1221 (14)O6—H6O0.74 (3)
Co1—O82.1221 (14)O8—H810.89 (3)
Co1—O5i2.1225 (13)O8—H820.77 (3)
Co1—O52.1225 (13)N1—C31.487 (3)
P1—O21.5031 (13)N1—H2N0.88 (3)
P1—O41.5199 (12)N1—H3N0.91 (3)
P1—O31.5469 (14)N1—H1N0.870 (17)
P1—C11.8367 (17)C1—C21.542 (2)
P2—O51.5115 (13)C2—C31.527 (3)
P2—O71.5149 (13)C2—H2A0.9900
P2—O61.5609 (14)C2—H2B0.9900
P2—C11.8422 (16)C3—H3A0.9900
O1—C11.448 (2)C3—H3B0.9900
O2i—Co1—O2180.0P2—O5—Co1130.65 (7)
O2i—Co1—O8i92.52 (5)P2—O6—H6O111 (2)
O2—Co1—O8i87.48 (5)Co1—O8—H81126.4 (17)
O2i—Co1—O887.48 (5)Co1—O8—H82107 (2)
O2—Co1—O892.52 (5)H81—O8—H82107 (2)
O8i—Co1—O8180.0C3—N1—H2N111.7 (18)
O2i—Co1—O5i92.85 (5)C3—N1—H3N109.5 (17)
O2—Co1—O5i87.15 (5)H2N—N1—H3N109 (2)
O8i—Co1—O5i90.19 (5)C3—N1—H1N107.2 (19)
O8—Co1—O5i89.81 (5)H2N—N1—H1N113 (2)
O2i—Co1—O587.15 (5)H3N—N1—H1N106 (2)
O2—Co1—O592.85 (5)O1—C1—C2108.19 (14)
O8i—Co1—O589.81 (5)O1—C1—P1108.73 (11)
O8—Co1—O590.19 (5)C2—C1—P1107.85 (11)
O5i—Co1—O5180.00 (7)O1—C1—P2109.67 (11)
O2—P1—O4114.17 (7)C2—C1—P2108.63 (12)
O2—P1—O3110.62 (8)P1—C1—P2113.62 (9)
O4—P1—O3110.93 (8)C3—C2—C1113.39 (14)
O2—P1—C1109.00 (8)C3—C2—H2A108.9
O4—P1—C1105.91 (8)C1—C2—H2A108.9
O3—P1—C1105.73 (8)C3—C2—H2B108.9
O5—P2—O7114.46 (8)C1—C2—H2B108.9
O5—P2—O6111.46 (8)H2A—C2—H2B107.7
O7—P2—O6108.02 (7)N1—C3—C2108.60 (15)
O5—P2—C1107.58 (7)N1—C3—H3A110.0
O7—P2—C1108.58 (8)C2—C3—H3A110.0
O6—P2—C1106.40 (8)N1—C3—H3B110.0
C1—O1—H1O119.0 (17)C2—C3—H3B110.0
P1—O2—Co1129.11 (7)H3A—C3—H3B108.4
P1—O3—H3O115 (2)
O4—P1—O2—Co1−170.27 (9)O4—P1—C1—C261.76 (13)
O3—P1—O2—Co163.77 (11)O3—P1—C1—C2179.55 (12)
C1—P1—O2—Co1−52.07 (12)O2—P1—C1—P258.97 (11)
O8i—Co1—O2—P1−55.98 (10)O4—P1—C1—P2−177.76 (9)
O8—Co1—O2—P1124.02 (10)O3—P1—C1—P2−59.97 (11)
O5i—Co1—O2—P1−146.30 (11)O5—P2—C1—O1−177.36 (11)
O5—Co1—O2—P133.70 (11)O7—P2—C1—O158.25 (13)
O7—P2—O5—Co1166.92 (9)O6—P2—C1—O1−57.80 (13)
O6—P2—O5—Co1−70.11 (12)O5—P2—C1—C264.58 (13)
C1—P2—O5—Co146.17 (13)O7—P2—C1—C2−59.81 (13)
O2i—Co1—O5—P2148.83 (11)O6—P2—C1—C2−175.86 (11)
O2—Co1—O5—P2−31.17 (11)O5—P2—C1—P1−55.46 (11)
O8i—Co1—O5—P256.30 (11)O7—P2—C1—P1−179.85 (8)
O8—Co1—O5—P2−123.70 (11)O6—P2—C1—P164.10 (11)
O2—P1—C1—O1−178.61 (10)O1—C1—C2—C3−31.88 (19)
O4—P1—C1—O1−55.34 (13)P1—C1—C2—C3−149.34 (13)
O3—P1—C1—O162.45 (12)P2—C1—C2—C387.10 (16)
O2—P1—C1—C2−61.51 (13)C1—C2—C3—N1−173.76 (14)
D—H···AD—HH···AD···AD—H···A
O1—H1O···O5ii0.85 (3)2.05 (3)2.845 (2)155 (2)
O3—H3O···O7ii0.76 (3)1.72 (3)2.4627 (19)167 (3)
O6—H6O···O4iii0.74 (3)1.78 (3)2.5124 (18)175 (3)
O8—H81···O4iv0.89 (3)1.88 (3)2.7277 (18)160 (2)
O8—H82···O1v0.77 (3)2.25 (3)2.8953 (19)142 (3)
N1—H2N···O6v0.88 (3)2.15 (3)2.975 (2)156 (2)
N1—H3N···O2iv0.91 (3)2.30 (3)3.096 (2)146 (2)
N1—H3N···O5vi0.91 (3)2.32 (3)3.030 (2)134 (2)
N1—H1N···O4vii0.87 (2)2.33 (2)3.071 (2)143 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O⋯O5i0.85 (3)2.05 (3)2.845 (2)155 (2)
O3—H3O⋯O7i0.76 (3)1.72 (3)2.4627 (19)167 (3)
O6—H6O⋯O4ii0.74 (3)1.78 (3)2.5124 (18)175 (3)
O8—H81⋯O4iii0.89 (3)1.88 (3)2.7277 (18)160 (2)
O8—H82⋯O1iv0.77 (3)2.25 (3)2.8953 (19)142 (3)
N1—H2N⋯O6iv0.88 (3)2.15 (3)2.975 (2)156 (2)
N1—H3N⋯O2iii0.91 (3)2.30 (3)3.096 (2)146 (2)
N1—H3N⋯O5v0.91 (3)2.32 (3)3.030 (2)134 (2)
N1—H1N⋯O4vi0.87 (2)2.33 (2)3.071 (2)143 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Bis(1-ammonio-ethane-1,1-diyl-diphos-phonato-κO,O')diaqua-cobalt(II) nona-hydrate.

Authors:  Vladimir V Bon; Anatolij V Dudko; Alexandra N Kozachkova; Vasily I Pekhnyo; Natalia V Tsaryk
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-17
  2 in total

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