Literature DB >> 22199507

Diaqua-bis-[5-(pyrazin-2-yl-κN)-3-(pyridin-3-yl)-1,2,4-triazolido-κN]cadmium.

Jing-Jing Yang1, Jun Zhao.   

Abstract

In the title compound, [Cd(C(11)H(7)N(6))(2)(H(2)O)(2)], the Cd(II) cation is located on an inversion center and is coordinated by four N atoms from two 5-(pyrazin-2-yl)-3-(pyridin-3-yl)-1,2,4-triazol-ide anions and two water mol-ecules in a distorted octa-hedral geometry. The triazolide ligand is nearly planar: the central triazole ring is oriented at dihedral angles of 4.63 (13) and 8.41 (13)° with respect to the pyrazine and pyridine rings. Inter-molecular O-H⋯N hydrogen bonds link the mol-ecules into a two-dimensional supra-molecular network parallel to (001).

Entities:  

Year:  2011        PMID: 22199507      PMCID: PMC3238616          DOI: 10.1107/S1600536811045545

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to metal-organic frameworks, see: Kitagawa et al. (2004 ▶). For 1,2,4-triazole derivatives, see: Chen et al. (2006 ▶); Zhang et al. (2005 ▶).

Experimental

Crystal data

[Cd(C11H7N6)2(H2O)2] M = 594.88 Monoclinic, a = 8.640 (5) Å b = 5.684 (3) Å c = 23.157 (13) Å β = 99.102 (6)° V = 1122.9 (11) Å3 Z = 2 Mo Kα radiation μ = 1.02 mm−1 T = 296 K 0.24 × 0.21 × 0.20 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.782, T max = 0.815 11387 measured reflections 2571 independent reflections 2251 reflections with I > 2σ(I) R int = 0.057

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.081 S = 1.09 2571 reflections 175 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.38 e Å−3 Δρmin = −0.82 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811045545/xu5363sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811045545/xu5363Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cd(C11H7N6)2(H2O)2]F(000) = 596
Mr = 594.88Dx = 1.759 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2671 reflections
a = 8.640 (5) Åθ = 2.4–27.5°
b = 5.684 (3) ŵ = 1.02 mm1
c = 23.157 (13) ÅT = 296 K
β = 99.102 (6)°Prism, colorless
V = 1122.9 (11) Å30.24 × 0.21 × 0.20 mm
Z = 2
Bruker SMART CCD diffractometer2571 independent reflections
Radiation source: fine-focus sealed tube2251 reflections with I > 2σ(I)
graphiteRint = 0.057
φ and ω scansθmax = 27.5°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −11→11
Tmin = 0.782, Tmax = 0.815k = −7→7
11387 measured reflectionsl = −30→30
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.081H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0336P)2 + 0.5415P] where P = (Fo2 + 2Fc2)/3
2571 reflections(Δ/σ)max < 0.001
175 parametersΔρmax = 0.38 e Å3
3 restraintsΔρmin = −0.82 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cd10.00001.00000.00000.02997 (10)
N10.0416 (2)1.1638 (3)0.09658 (9)0.0272 (4)
N20.0947 (3)1.2756 (4)0.21582 (9)0.0365 (5)
N30.1919 (2)0.7738 (3)0.05584 (9)0.0295 (4)
N40.2884 (2)0.5850 (4)0.05077 (9)0.0306 (4)
N50.3260 (2)0.6991 (3)0.14563 (9)0.0290 (4)
N60.6292 (3)0.0309 (4)0.09166 (12)0.0395 (6)
O1−0.1880 (2)0.7608 (3)0.03044 (8)0.0343 (4)
H1A−0.263 (3)0.840 (5)0.0406 (13)0.051*
H1B−0.227 (3)0.657 (4)0.0055 (12)0.051*
C1−0.0256 (3)1.3500 (4)0.11794 (11)0.0321 (5)
H1−0.09321.44400.09250.039*
C20.0024 (3)1.4061 (5)0.17639 (12)0.0346 (6)
H2−0.04451.53990.18900.042*
C30.1625 (3)1.0904 (5)0.19467 (11)0.0340 (6)
H30.22810.99550.22060.041*
C40.1390 (3)1.0333 (4)0.13529 (11)0.0257 (5)
C50.2188 (3)0.8347 (4)0.11250 (10)0.0266 (5)
C60.3651 (3)0.5483 (4)0.10522 (12)0.0272 (5)
C70.4792 (3)0.3558 (4)0.12057 (11)0.0288 (5)
C80.5377 (3)0.3073 (5)0.17899 (12)0.0343 (6)
H80.50790.39960.20850.041*
C90.6405 (3)0.1208 (5)0.19295 (12)0.0379 (6)
H90.68100.08670.23170.045*
C100.6809 (3)−0.0120 (4)0.14809 (15)0.0387 (7)
H100.7480−0.13900.15760.046*
C110.5315 (3)0.2144 (5)0.07830 (12)0.0361 (6)
H110.49720.24850.03910.043*
U11U22U33U12U13U23
Cd10.03525 (16)0.03198 (15)0.02068 (15)0.00690 (10)−0.00171 (11)−0.00100 (9)
N10.0299 (10)0.0262 (9)0.0249 (10)0.0034 (8)0.0026 (8)−0.0011 (8)
N20.0473 (13)0.0357 (11)0.0264 (11)0.0039 (10)0.0051 (10)−0.0055 (9)
N30.0328 (10)0.0286 (10)0.0265 (11)0.0071 (9)0.0029 (8)−0.0022 (8)
N40.0332 (11)0.0292 (10)0.0290 (11)0.0085 (9)0.0034 (9)−0.0033 (9)
N50.0289 (10)0.0302 (10)0.0264 (10)0.0061 (8)0.0001 (8)−0.0010 (8)
N60.0334 (12)0.0420 (13)0.0434 (15)0.0122 (10)0.0067 (11)−0.0048 (10)
O10.0345 (9)0.0326 (9)0.0357 (10)0.0041 (8)0.0055 (8)−0.0061 (8)
C10.0355 (13)0.0287 (12)0.0318 (13)0.0068 (10)0.0044 (11)0.0012 (10)
C20.0423 (14)0.0292 (12)0.0342 (14)0.0054 (11)0.0119 (11)−0.0028 (11)
C30.0411 (14)0.0338 (13)0.0251 (13)0.0057 (11)−0.0005 (11)−0.0005 (11)
C40.0249 (11)0.0282 (11)0.0237 (12)0.0012 (9)0.0029 (9)0.0017 (9)
C50.0262 (11)0.0264 (11)0.0269 (12)0.0027 (9)0.0036 (9)−0.0001 (9)
C60.0237 (11)0.0295 (11)0.0281 (13)0.0035 (9)0.0033 (10)−0.0002 (10)
C70.0256 (11)0.0282 (11)0.0316 (13)0.0043 (9)0.0018 (10)0.0007 (10)
C80.0331 (13)0.0359 (13)0.0330 (14)0.0057 (11)0.0030 (11)−0.0010 (11)
C90.0355 (14)0.0410 (14)0.0357 (15)0.0077 (12)0.0011 (11)0.0070 (12)
C100.0323 (13)0.0335 (14)0.0497 (19)0.0104 (11)0.0045 (13)0.0053 (11)
C110.0330 (13)0.0431 (14)0.0315 (14)0.0084 (11)0.0031 (11)−0.0025 (11)
Cd1—O1i2.312 (2)O1—H1A0.850 (17)
Cd1—O12.312 (2)O1—H1B0.859 (17)
Cd1—N1i2.397 (2)C1—C21.374 (4)
Cd1—N12.397 (2)C1—H10.9300
Cd1—N32.323 (2)C2—H20.9300
Cd1—N3i2.323 (2)C3—C41.396 (4)
N1—C11.339 (3)C3—H30.9300
N1—C41.351 (3)C4—C51.464 (3)
N2—C31.334 (3)C6—C71.478 (3)
N2—C21.338 (3)C7—C111.396 (4)
N3—C51.341 (3)C7—C81.395 (4)
N3—N41.375 (3)C8—C91.388 (4)
N4—C61.345 (3)C8—H80.9300
N5—C51.347 (3)C9—C101.373 (4)
N5—C61.351 (3)C9—H90.9300
N6—C101.335 (4)C10—H100.9300
N6—C111.347 (3)C11—H110.9300
O1i—Cd1—O1180.00 (9)N2—C2—C1122.4 (2)
O1i—Cd1—N391.20 (8)N2—C2—H2118.8
O1—Cd1—N388.80 (8)C1—C2—H2118.8
O1i—Cd1—N3i88.80 (8)N2—C3—C4122.8 (2)
O1—Cd1—N3i91.20 (8)N2—C3—H3118.6
N3—Cd1—N3i180.00 (9)C4—C3—H3118.6
O1i—Cd1—N1i87.30 (7)N1—C4—C3120.3 (2)
O1—Cd1—N1i92.70 (7)N1—C4—C5117.6 (2)
N3—Cd1—N1i107.04 (7)C3—C4—C5122.1 (2)
N3i—Cd1—N1i72.96 (7)N3—C5—N5114.0 (2)
O1i—Cd1—N192.70 (7)N3—C5—C4122.2 (2)
O1—Cd1—N187.30 (7)N5—C5—C4123.8 (2)
N3—Cd1—N172.96 (7)N4—C6—N5114.3 (2)
N3i—Cd1—N1107.04 (7)N4—C6—C7123.5 (2)
N1i—Cd1—N1180.00 (4)N5—C6—C7122.2 (2)
C1—N1—C4116.8 (2)C11—C7—C8117.3 (2)
C1—N1—Cd1129.95 (16)C11—C7—C6122.3 (2)
C4—N1—Cd1113.06 (15)C8—C7—C6120.4 (2)
C3—N2—C2115.8 (2)C9—C8—C7119.8 (2)
C5—N3—N4105.73 (19)C9—C8—H8120.1
C5—N3—Cd1113.59 (15)C7—C8—H8120.1
N4—N3—Cd1140.64 (16)C10—C9—C8118.3 (3)
C6—N4—N3104.86 (19)C10—C9—H9120.9
C5—N5—C6101.1 (2)C8—C9—H9120.9
C10—N6—C11117.8 (2)N6—C10—C9123.7 (2)
Cd1—O1—H1A112 (2)N6—C10—H10118.2
Cd1—O1—H1B115 (2)C9—C10—H10118.2
H1A—O1—H1B108 (2)N6—C11—C7123.1 (3)
N1—C1—C2121.9 (2)N6—C11—H11118.5
N1—C1—H1119.1C7—C11—H11118.5
C2—C1—H1119.1
O1i—Cd1—N1—C188.8 (2)Cd1—N1—C4—C57.6 (3)
O1—Cd1—N1—C1−91.2 (2)N2—C3—C4—N1−1.6 (4)
N3—Cd1—N1—C1179.3 (2)N2—C3—C4—C5177.7 (2)
N3i—Cd1—N1—C1−0.7 (2)N4—N3—C5—N5−0.3 (3)
N1i—Cd1—N1—C1−49.9 (6)Cd1—N3—C5—N5177.79 (16)
O1i—Cd1—N1—C4−97.06 (17)N4—N3—C5—C4179.0 (2)
O1—Cd1—N1—C482.94 (17)Cd1—N3—C5—C4−2.9 (3)
N3—Cd1—N1—C4−6.62 (16)C6—N5—C5—N30.3 (3)
N3i—Cd1—N1—C4173.38 (16)C6—N5—C5—C4−179.0 (2)
N1i—Cd1—N1—C4124.2 (4)N1—C4—C5—N3−3.4 (3)
O1i—Cd1—N3—C597.31 (17)C3—C4—C5—N3177.4 (2)
O1—Cd1—N3—C5−82.69 (17)N1—C4—C5—N5175.8 (2)
N3i—Cd1—N3—C5−54 (63)C3—C4—C5—N5−3.5 (4)
N1i—Cd1—N3—C5−175.14 (16)N3—N4—C6—N50.0 (3)
N1—Cd1—N3—C54.86 (16)N3—N4—C6—C7178.2 (2)
O1i—Cd1—N3—N4−85.7 (3)C5—N5—C6—N4−0.2 (3)
O1—Cd1—N3—N494.3 (3)C5—N5—C6—C7−178.4 (2)
N3i—Cd1—N3—N4123 (62)N4—C6—C7—C118.4 (4)
N1i—Cd1—N3—N41.9 (3)N5—C6—C7—C11−173.5 (2)
N1—Cd1—N3—N4−178.1 (3)N4—C6—C7—C8−170.8 (2)
C5—N3—N4—C60.1 (3)N5—C6—C7—C87.2 (4)
Cd1—N3—N4—C6−177.05 (19)C11—C7—C8—C9−1.5 (4)
C4—N1—C1—C2−0.1 (4)C6—C7—C8—C9177.7 (2)
Cd1—N1—C1—C2173.81 (19)C7—C8—C9—C10−0.4 (4)
C3—N2—C2—C12.1 (4)C11—N6—C10—C9−0.3 (4)
N1—C1—C2—N2−1.9 (4)C8—C9—C10—N61.3 (4)
C2—N2—C3—C4−0.4 (4)C10—N6—C11—C7−1.8 (4)
C1—N1—C4—C31.8 (3)C8—C7—C11—N62.7 (4)
Cd1—N1—C4—C3−173.18 (19)C6—C7—C11—N6−176.5 (2)
C1—N1—C4—C5−177.5 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1A···N6ii0.85 (2)1.95 (2)2.751 (3)157 (3)
O1—H1B···N4iii0.86 (2)1.91 (2)2.763 (3)173 (3)
Table 1

Selected bond lengths (Å)

Cd1—O12.312 (2)
Cd1—N12.397 (2)
Cd1—N32.323 (2)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯N6i0.85 (2)1.95 (2)2.751 (3)157 (3)
O1—H1B⋯N4ii0.86 (2)1.91 (2)2.763 (3)173 (3)

Symmetry codes: (i) ; (ii) .

  3 in total

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