Literature DB >> 22199501

Poly[diaqua-bis-(μ(3)-1H-imidazole-4,5-dicarboxyl-ato)(μ(2)-sulfato)-diytterbium(III)].

Li-Cai Zhu1.   

Abstract

In the title compound, [Yb(2)(C(5)H(2)N(2)O(4))(2)(SO(4))(H(2)O)(2)](n), the Yb(III) ion is eight-coordinated by four O atoms and one N atom from three imidazole-4,5-dicarboxyl-ate ligands, two O atoms from one SO(4) (2-) anion (site symmetry 2), as well as one O atom of a water mol-ecule, giving a bicapped trigonal-prismatic coordination geometry. The metal coordination units are connected by bridging imidazole-4,5-dicarboxyl-ate and sulfate ligands, generating a heterometallic layer. The layers are stacked along the a axis via N-H⋯O, O-H⋯O, and C-H⋯O hydrogen-bonding inter-actions, generating a three-dimensional framework.

Entities:  

Year:  2011        PMID: 22199501      PMCID: PMC3238610          DOI: 10.1107/S1600536811045673

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the application of multifunctional organic ligands containing O- and N-donors in the design of metal-organic frameworks, see: Cheng et al. (2006 ▶); Kuang et al. (2007 ▶); Sun et al. (2006 ▶); Zhu et al. (2010 ▶).

Experimental

Crystal data

[Yb2(C5H2N2O4)2(SO4)(H2O)2] M = 786.35 Monoclinic, a = 21.1089 (14) Å b = 6.5584 (4) Å c = 12.8766 (9) Å β = 105.874 (1)° V = 1714.7 (2) Å3 Z = 4 Mo Kα radiation μ = 11.05 mm−1 T = 296 K 0.20 × 0.18 × 0.15 mm

Data collection

Bruker APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.126, T max = 0.191 4239 measured reflections 1534 independent reflections 1392 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.020 wR(F 2) = 0.047 S = 1.09 1534 reflections 150 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.66 e Å−3 Δρmin = −0.99 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811045673/pv2472sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811045673/pv2472Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Yb2(C5H2N2O4)2(SO4)(H2O)2]F(000) = 1456
Mr = 786.35Dx = 3.046 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2574 reflections
a = 21.1089 (14) Åθ = 3.3–28.0°
b = 6.5584 (4) ŵ = 11.05 mm1
c = 12.8766 (9) ÅT = 296 K
β = 105.874 (1)°Block, colorless
V = 1714.7 (2) Å30.20 × 0.18 × 0.15 mm
Z = 4
Bruker APEXII area-detector diffractometer1534 independent reflections
Radiation source: fine-focus sealed tube1392 reflections with I > 2σ(I)
graphiteRint = 0.023
φ and ω scanθmax = 25.2°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −25→22
Tmin = 0.126, Tmax = 0.191k = −7→7
4239 measured reflectionsl = −14→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.020Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.047H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0216P)2 + 5.6648P] where P = (Fo2 + 2Fc2)/3
1534 reflections(Δ/σ)max = 0.001
150 parametersΔρmax = 0.66 e Å3
4 restraintsΔρmin = −0.99 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Yb10.355312 (10)0.07841 (3)0.714967 (16)0.01086 (9)
S10.50000.0299 (3)0.75000.0182 (4)
C10.3390 (2)0.0272 (7)0.9554 (4)0.0134 (10)
C20.3697 (2)0.2318 (7)0.9654 (4)0.0148 (10)
C30.3764 (2)0.3838 (7)1.0402 (4)0.0145 (10)
C40.3492 (2)0.4128 (7)1.1340 (4)0.0128 (10)
C50.4168 (2)0.4805 (8)0.9077 (4)0.0179 (11)
H50.43710.56030.86640.022*
N10.3942 (2)0.2930 (6)0.8817 (3)0.0165 (9)
N20.4065 (2)0.5391 (6)1.0009 (3)0.0183 (10)
H10.420 (3)0.648 (6)1.039 (4)0.027*
O10.32418 (19)−0.0583 (5)1.0318 (3)0.0220 (9)
O20.32955 (18)−0.0546 (5)0.8633 (3)0.0192 (8)
O30.33204 (18)0.2591 (5)1.1767 (3)0.0219 (8)
O40.34067 (19)0.5917 (5)1.1620 (3)0.0219 (8)
O50.45816 (18)−0.0925 (5)0.7997 (3)0.0304 (10)
O60.45308 (19)0.1572 (6)0.6710 (3)0.0349 (10)
O1W0.24374 (18)0.1038 (6)0.6799 (3)0.0250 (9)
H2W0.224 (2)0.201 (6)0.646 (4)0.037*
H1W0.221 (3)0.075 (8)0.720 (4)0.037*
U11U22U33U12U13U23
Yb10.01712 (13)0.00743 (13)0.00944 (13)0.00016 (8)0.00604 (9)0.00022 (8)
S10.0156 (9)0.0145 (9)0.0250 (10)0.0000.0063 (8)0.000
C10.017 (2)0.010 (2)0.012 (3)0.0000 (19)0.001 (2)0.001 (2)
C20.021 (2)0.012 (3)0.011 (2)−0.003 (2)0.0040 (19)0.000 (2)
C30.021 (3)0.013 (2)0.011 (2)0.002 (2)0.006 (2)0.001 (2)
C40.017 (2)0.010 (3)0.010 (2)−0.0018 (19)0.002 (2)−0.0017 (19)
C50.025 (3)0.015 (3)0.015 (3)−0.005 (2)0.008 (2)0.003 (2)
N10.024 (2)0.012 (2)0.016 (2)−0.0023 (17)0.0082 (18)−0.0010 (17)
N20.027 (2)0.014 (2)0.016 (2)−0.0064 (19)0.0084 (19)−0.0018 (18)
O10.042 (2)0.0151 (19)0.0107 (19)−0.0090 (16)0.0095 (17)−0.0001 (15)
O20.033 (2)0.0155 (19)0.0110 (18)−0.0084 (15)0.0090 (15)−0.0058 (15)
O30.037 (2)0.0144 (19)0.0182 (18)0.0042 (16)0.0134 (16)0.0061 (16)
O40.039 (2)0.0103 (19)0.018 (2)0.0028 (16)0.0105 (17)−0.0009 (14)
O50.021 (2)0.030 (2)0.041 (3)0.0019 (16)0.0104 (18)0.0155 (19)
O60.023 (2)0.044 (2)0.041 (3)0.0071 (19)0.0135 (19)0.027 (2)
O1W0.024 (2)0.023 (2)0.031 (2)0.0066 (17)0.0129 (18)0.0083 (17)
Yb1—O4i2.264 (3)C1—C21.481 (6)
Yb1—O1ii2.272 (3)C2—C31.367 (7)
Yb1—O1W2.280 (4)C2—N11.377 (6)
Yb1—O3ii2.291 (3)C3—N21.369 (6)
Yb1—O22.297 (3)C3—C41.485 (7)
Yb1—O62.342 (4)C4—O31.249 (6)
Yb1—O52.421 (4)C4—O41.255 (5)
Yb1—N12.510 (4)C5—N11.328 (6)
Yb1—S12.9798 (3)C5—N21.334 (7)
S1—O5iii1.464 (4)C5—H50.9300
S1—O51.464 (4)N2—H10.87 (5)
S1—O6iii1.470 (4)O1—Yb1iv2.272 (3)
S1—O61.470 (4)O3—Yb1iv2.291 (3)
S1—Yb1iii2.9798 (3)O4—Yb1v2.264 (3)
C1—O11.244 (6)O1W—H2W0.82 (2)
C1—O21.266 (6)O1W—H1W0.82 (6)
O4i—Yb1—O1ii76.46 (12)O6iii—S1—O6110.8 (4)
O4i—Yb1—O1W79.74 (14)O5iii—S1—Yb1135.09 (15)
O1ii—Yb1—O1W78.99 (15)O5—S1—Yb153.75 (14)
O4i—Yb1—O3ii148.74 (13)O6iii—S1—Yb1120.86 (16)
O1ii—Yb1—O3ii74.75 (12)O6—S1—Yb150.65 (15)
O1W—Yb1—O3ii83.05 (14)O5iii—S1—Yb1iii53.75 (14)
O4i—Yb1—O2124.73 (12)O5—S1—Yb1iii135.09 (15)
O1ii—Yb1—O2140.73 (13)O6iii—S1—Yb1iii50.65 (15)
O1W—Yb1—O274.07 (14)O6—S1—Yb1iii120.86 (16)
O3ii—Yb1—O274.10 (12)Yb1—S1—Yb1iii167.75 (7)
O4i—Yb1—O676.89 (14)O1—C1—O2122.7 (4)
O1ii—Yb1—O677.64 (14)O1—C1—C2122.6 (4)
O1W—Yb1—O6150.11 (14)O2—C1—C2114.7 (4)
O3ii—Yb1—O6108.21 (14)C3—C2—N1110.6 (4)
O2—Yb1—O6135.20 (13)C3—C2—C1132.9 (5)
O4i—Yb1—O5127.57 (13)N1—C2—C1116.5 (4)
O1ii—Yb1—O5114.21 (14)C2—C3—N2104.5 (4)
O1W—Yb1—O5150.85 (13)C2—C3—C4132.8 (4)
O3ii—Yb1—O576.28 (13)N2—C3—C4121.8 (4)
O2—Yb1—O580.58 (13)O3—C4—O4123.2 (5)
O6—Yb1—O558.02 (13)O3—C4—C3118.5 (4)
O4i—Yb1—N172.99 (13)O4—C4—C3118.1 (4)
O1ii—Yb1—N1148.68 (12)N1—C5—N2111.0 (4)
O1W—Yb1—N1101.95 (14)N1—C5—H5124.5
O3ii—Yb1—N1136.57 (13)N2—C5—H5124.5
O2—Yb1—N166.31 (12)C5—N1—C2105.0 (4)
O6—Yb1—N188.79 (15)C5—N1—Yb1138.2 (3)
O5—Yb1—N180.25 (14)C2—N1—Yb1113.6 (3)
O4i—Yb1—S1101.39 (10)C5—N2—C3109.0 (4)
O1ii—Yb1—S198.30 (10)C5—N2—H1130 (4)
O1W—Yb1—S1176.78 (11)C3—N2—H1121 (4)
O3ii—Yb1—S194.59 (10)C1—O1—Yb1iv141.5 (3)
O2—Yb1—S1107.44 (9)C1—O2—Yb1127.3 (3)
O6—Yb1—S129.03 (9)C4—O3—Yb1iv143.5 (3)
O5—Yb1—S129.18 (9)C4—O4—Yb1v164.1 (3)
N1—Yb1—S181.27 (10)S1—O5—Yb197.06 (18)
O5iii—S1—O5113.5 (3)S1—O6—Yb1100.32 (19)
O5iii—S1—O6iii103.9 (2)Yb1—O1W—H2W121 (4)
O5—S1—O6iii112.4 (2)Yb1—O1W—H1W128 (4)
O5iii—S1—O6112.4 (2)H2W—O1W—H1W102 (3)
O5—S1—O6103.9 (2)
D—H···AD—HH···AD···AD—H···A
N2—H1···O6v0.87 (5)2.09 (3)2.925 (6)161 (5)
O1W—H2W···O2vi0.82 (2)1.94 (3)2.693 (5)151 (5)
O1W—H1W···O3vii0.82 (6)2.24 (4)2.896 (5)138 (5)
O1W—H1W···O4vii0.82 (6)2.51 (6)3.308 (5)167 (5)
C5—H5···O5viii0.932.523.347 (6)149.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1⋯O6i0.87 (5)2.09 (3)2.925 (6)161 (5)
O1W—H2W⋯O2ii0.82 (2)1.94 (3)2.693 (5)151 (5)
O1W—H1W⋯O3iii0.82 (6)2.24 (4)2.896 (5)138 (5)
O1W—H1W⋯O4iii0.82 (6)2.51 (6)3.308 (5)167 (5)
C5—H5⋯O5iv0.932.523.347 (6)149

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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