Literature DB >> 22198179

DESTAF: a database of text-mined associations for reproductive toxins potentially affecting human fertility.

Adam S Dawe1, Aleksandar Radovanovic, Mandeep Kaur, Sunil Sagar, Sundararajan V Seshadri, Ulf Schaefer, Allan A Kamau, Alan Christoffels, Vladimir B Bajic.   

Abstract

The Dragon Exploration System for Toxicants and Fertility (DESTAF) is a publicly available resource which enables researchers to efficiently explore both known and potentially novel information and associations in the field of reproductive toxicology. To create DESTAF we used data from the literature (including over 10500 PubMed abstracts), several publicly available biomedical repositories, and specialized, curated dictionaries. DESTAF has an interface designed to facilitate rapid assessment of the key associations between relevant concepts, allowing for a more in-depth exploration of information based on different gene/protein-, enzyme/metabolite-, toxin/chemical-, disease- or anatomically centric perspectives. As a special feature, DESTAF allows for the creation and initial testing of potentially new association hypotheses that suggest links between biological entities identified through the database. DESTAF, along with a PDF manual, can be found at http://cbrc.kaust.edu.sa/destaf. It is free to academic and non-commercial users and will be updated quarterly.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 22198179     DOI: 10.1016/j.reprotox.2011.12.007

Source DB:  PubMed          Journal:  Reprod Toxicol        ISSN: 0890-6238            Impact factor:   3.143


  10 in total

1.  DES-Mutation: System for Exploring Links of Mutations and Diseases.

Authors:  Vasiliki Kordopati; Adil Salhi; Rozaimi Razali; Aleksandar Radovanovic; Faroug Tifratene; Mahmut Uludag; Yu Li; Ameerah Bokhari; Ahdab AlSaieedi; Arwa Bin Raies; Christophe Van Neste; Magbubah Essack; Vladimir B Bajic
Journal:  Sci Rep       Date:  2018-09-06       Impact factor: 4.379

2.  DES-Tcell is a knowledgebase for exploring immunology-related literature.

Authors:  Ahdab AlSaieedi; Adil Salhi; Faroug Tifratene; Arwa Bin Raies; Arnaud Hungler; Mahmut Uludag; Christophe Van Neste; Vladimir B Bajic; Takashi Gojobori; Magbubah Essack
Journal:  Sci Rep       Date:  2021-07-12       Impact factor: 4.379

3.  Dragon exploration system on marine sponge compounds interactions.

Authors:  Sunil Sagar; Mandeep Kaur; Aleksandar Radovanovic; Vladimir B Bajic
Journal:  J Cheminform       Date:  2013-02-16       Impact factor: 5.514

4.  DES-ncRNA: A knowledgebase for exploring information about human micro and long noncoding RNAs based on literature-mining.

Authors:  Adil Salhi; Magbubah Essack; Tanvir Alam; Vladan P Bajic; Lina Ma; Aleksandar Radovanovic; Benoit Marchand; Sebastian Schmeier; Zhang Zhang; Vladimir B Bajic
Journal:  RNA Biol       Date:  2017-04-07       Impact factor: 4.652

5.  DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species.

Authors:  Adil Salhi; Sónia Negrão; Magbubah Essack; Mitchell J L Morton; Salim Bougouffa; Rozaimi Razali; Aleksandar Radovanovic; Benoit Marchand; Maxat Kulmanov; Robert Hoehndorf; Mark Tester; Vladimir B Bajic
Journal:  Sci Rep       Date:  2017-07-20       Impact factor: 4.379

6.  DES-ROD: Exploring Literature to Develop New Links between RNA Oxidation and Human Diseases.

Authors:  Magbubah Essack; Adil Salhi; Christophe Van Neste; Arwa Bin Raies; Faroug Tifratene; Mahmut Uludag; Arnaud Hungler; Bozidarka Zaric; Sonja Zafirovic; Takashi Gojobori; Esma Isenovic; Vladan P Bajic
Journal:  Oxid Med Cell Longev       Date:  2020-03-27       Impact factor: 6.543

Review 7.  Redox control of vascular biology.

Authors:  Milan Obradovic; Magbubah Essack; Sonja Zafirovic; Emina Sudar-Milovanovic; Vladan P Bajic; Christophe Van Neste; Andreja Trpkovic; Julijana Stanimirovic; Vladimir B Bajic; Esma R Isenovic
Journal:  Biofactors       Date:  2019-09-04       Impact factor: 6.113

8.  DES-Amyloidoses "Amyloidoses through the looking-glass": A knowledgebase developed for exploring and linking information related to human amyloid-related diseases.

Authors:  Vladan P Bajic; Adil Salhi; Katja Lakota; Aleksandar Radovanovic; Rozaimi Razali; Lada Zivkovic; Biljana Spremo-Potparevic; Mahmut Uludag; Faroug Tifratene; Olaa Motwalli; Benoit Marchand; Vladimir B Bajic; Takashi Gojobori; Esma R Isenovic; Magbubah Essack
Journal:  PLoS One       Date:  2022-07-25       Impact factor: 3.752

9.  Information exploration system for sickle cell disease and repurposing of hydroxyfasudil.

Authors:  Magbubah Essack; Aleksandar Radovanovic; Vladimir B Bajic
Journal:  PLoS One       Date:  2013-06-10       Impact factor: 3.240

10.  DESM: portal for microbial knowledge exploration systems.

Authors:  Adil Salhi; Magbubah Essack; Aleksandar Radovanovic; Benoit Marchand; Salim Bougouffa; Andre Antunes; Marta Filipa Simoes; Feras F Lafi; Olaa A Motwalli; Ameerah Bokhari; Tariq Malas; Soha Al Amoudi; Ghofran Othum; Intikhab Allam; Katsuhiko Mineta; Xin Gao; Robert Hoehndorf; John A C Archer; Takashi Gojobori; Vladimir B Bajic
Journal:  Nucleic Acids Res       Date:  2015-11-05       Impact factor: 16.971

  10 in total

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