Literature DB >> 22195208

Identifying symptom groups from Emergency Department presenting complaint free text using SNOMED CT.

Amol S Wagholikar1, Michael J Lawley, David P Hansen, Kevin Chu.   

Abstract

Patients presenting to Emergency Departments may be categorised into different symptom groups for the purpose of research and quality improvement. The grouping is challenging due to the variability in the way presenting complaints are recorded by clinical staff. This work proposes analysis of the presenting complaint free-text using the semantics encoded in the SNOMED CT ontology. This work demonstrates a validated prototype system that can classify unstructured free-text narratives into patient's symptom group. A rule-based mechanism was developed using variety of keywords to identify the patient's symptom group. The system was validated against the manual identification of the symptom groups by two expert clinical research nurses on 794 patient presentations from six participating hospitals. The comparison of system results with one clinical research nurse showed 99.3% sensitivity; 80.0% specificity and 0.9 F-score for identifying "chest pain" symptom group.

Entities:  

Mesh:

Year:  2011        PMID: 22195208      PMCID: PMC3243271     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  8 in total

1.  Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program.

Authors:  A R Aronson
Journal:  Proc AMIA Symp       Date:  2001

2.  AHIMA project offers insights into SNOMED, ICD-9-CM mapping process.

Authors:  Kathy Brouch
Journal:  J AHIMA       Date:  2003 Jul-Aug

3.  Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications.

Authors:  Guergana K Savova; James J Masanz; Philip V Ogren; Jiaping Zheng; Sunghwan Sohn; Karin C Kipper-Schuler; Christopher G Chute
Journal:  J Am Med Inform Assoc       Date:  2010 Sep-Oct       Impact factor: 4.497

Review 4.  Natural Language Processing methods and systems for biomedical ontology learning.

Authors:  Kaihong Liu; William R Hogan; Rebecca S Crowley
Journal:  J Biomed Inform       Date:  2010-07-18       Impact factor: 6.317

5.  Classifying free-text triage chief complaints into syndromic categories with natural language processing.

Authors:  Wendy W Chapman; Lee M Christensen; Michael M Wagner; Peter J Haug; Oleg Ivanov; John N Dowling; Robert T Olszewski
Journal:  Artif Intell Med       Date:  2005-01       Impact factor: 5.326

6.  Coordinating SNOMED-CT and ICD-10.

Authors:  Sue Bowman
Journal:  J AHIMA       Date:  2005 Jul-Aug

7.  Towards semantic interoperability for electronic health records.

Authors:  Sebastian Garde; Petra Knaup; Evelyn Hovenga; Sam Heard
Journal:  Methods Inf Med       Date:  2007       Impact factor: 2.176

8.  Extracting principal diagnosis, co-morbidity and smoking status for asthma research: evaluation of a natural language processing system.

Authors:  Qing T Zeng; Sergey Goryachev; Scott Weiss; Margarita Sordo; Shawn N Murphy; Ross Lazarus
Journal:  BMC Med Inform Decis Mak       Date:  2006-07-26       Impact factor: 2.796

  8 in total
  4 in total

1.  Generalized Extraction and Classification of Span-Level Clinical Phrases.

Authors:  Tyler Baldwin; Yufan Guo; Vandana V Mukherjee; Tanveer Syeda-Mahmood
Journal:  AMIA Annu Symp Proc       Date:  2018-12-05

2.  Multi-label classification of symptom terms from free-text bilingual adverse drug reaction reports using natural language processing.

Authors:  Sitthichok Chaichulee; Chissanupong Promchai; Tanyamai Kaewkomon; Chanon Kongkamol; Thammasin Ingviya; Pasuree Sangsupawanich
Journal:  PLoS One       Date:  2022-08-04       Impact factor: 3.752

3.  Use of the Systematized Nomenclature of Medicine Clinical Terms (SNOMED CT) for Processing Free Text in Health Care: Systematic Scoping Review.

Authors:  Christophe Gaudet-Blavignac; Vasiliki Foufi; Mina Bjelogrlic; Christian Lovis
Journal:  J Med Internet Res       Date:  2021-01-26       Impact factor: 5.428

4.  Structured classification for ED presenting complaints - from free text field-based approach to ICPC-2 ED application.

Authors:  Tomi Malmström; Olli Huuskonen; Paulus Torkki; Raija Malmström
Journal:  Scand J Trauma Resusc Emerg Med       Date:  2012-11-24       Impact factor: 2.953

  4 in total

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