Literature DB >> 22194331

Rapid visualization of hydrogen positions in protein neutron crystallographic structures.

Parthapratim Munshi1, Shang-Lin Chung, Matthew P Blakeley, Kevin L Weiss, Dean A A Myles, Flora Meilleur.   

Abstract

Neutron crystallography is a powerful technique for experimental visualization of the positions of light atoms, including hydrogen and its isotope deuterium. In recent years, structural biologists have shown increasing interest in the technique as it uniquely complements X-ray crystallographic data by revealing the positions of D atoms in macromolecules. With this regained interest, access to macromolecular neutron crystallography beamlines is becoming a limiting step. In this report, it is shown that a rapid data-collection strategy can be a valuable alternative to longer data-collection times in appropriate cases. Comparison of perdeuterated rubredoxin structures refined against neutron data sets collected over hours and up to 5 d shows that rapid neutron data collection in just 14 h is sufficient to provide the positions of 269 D atoms without ambiguity.

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Year:  2011        PMID: 22194331     DOI: 10.1107/S0907444911048402

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  8 in total

1.  An electrically assisted device for protein crystallization in a vapor-diffusion setup.

Authors:  Edith Flores-Hernández; Vivian Stojanoff; Roberto Arreguín-Espinosa; Abel Moreno; Nuria Sánchez-Puig
Journal:  J Appl Crystallogr       Date:  2013-05-15       Impact factor: 3.304

2.  Current status of neutron crystallography in structural biology.

Authors:  Fumiaki Kono; Kazuo Kurihara; Taro Tamada
Journal:  Biophys Physicobiol       Date:  2022-04-01

3.  Refinement of macromolecular structures against neutron data with SHELXL2013.

Authors:  Tim Gruene; Hinrich W Hahn; Anna V Luebben; Flora Meilleur; George M Sheldrick
Journal:  J Appl Crystallogr       Date:  2013-12-07       Impact factor: 3.304

4.  Direct observation of hydrogen atom dynamics and interactions by ultrahigh resolution neutron protein crystallography.

Authors:  Julian C-H Chen; B Leif Hanson; S Zoë Fisher; Paul Langan; Andrey Y Kovalevsky
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-04       Impact factor: 11.205

Review 5.  Sub-atomic resolution X-ray crystallography and neutron crystallography: promise, challenges and potential.

Authors:  Matthew P Blakeley; Samar S Hasnain; Svetlana V Antonyuk
Journal:  IUCrJ       Date:  2015-06-30       Impact factor: 4.769

6.  Back-exchange of deuterium in neutron crystallography: characterization by IR spectroscopy.

Authors:  Ai Woon Yee; Matthew P Blakeley; Martine Moulin; Michael Haertlein; Edward Mitchell; V Trevor Forsyth
Journal:  J Appl Crystallogr       Date:  2017-03-24       Impact factor: 3.304

Review 7.  Fifteen years of the Protein Crystallography Station: the coming of age of macromolecular neutron crystallography.

Authors:  Julian C-H Chen; Clifford J Unkefer
Journal:  IUCrJ       Date:  2017-01-01       Impact factor: 4.769

Review 8.  An overview of biological macromolecule crystallization.

Authors:  Irene Russo Krauss; Antonello Merlino; Alessandro Vergara; Filomena Sica
Journal:  Int J Mol Sci       Date:  2013-05-31       Impact factor: 5.923

  8 in total

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