Literature DB >> 22194259

Single-molecule studies using magnetic traps.

Timothée Lionnet, Jean-François Allemand, Andrey Revyakin, Terence R Strick, Omar A Saleh, David Bensimon, Vincent Croquette.   

Abstract

In recent years, techniques have been developed to study and manipulate single molecules of DNA and other biopolymers. In one such technique, the magnetic trap, a single DNA molecule is bound at one end to a glass surface and at the other to a magnetic microbead. Small magnets, whose position and rotation can be controlled, pull on and rotate the microbead. This provides a simple method to stretch and twist the molecule. The system allows one to apply and measure forces ranging from 10(-3) to >100 pN. In contrast to other techniques, the force measurement is absolute and does not require calibration of the sensor. In this article, we describe the principle of the magnetic trap, as well as its use in the measurement of the elastic properties of DNA and the study of DNA-protein interactions.

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Year:  2012        PMID: 22194259     DOI: 10.1101/pdb.top067488

Source DB:  PubMed          Journal:  Cold Spring Harb Protoc        ISSN: 1559-6095


  17 in total

Review 1.  Approaches for measuring the dynamics of RNA-protein interactions.

Authors:  Donny D Licatalosi; Xuan Ye; Eckhard Jankowsky
Journal:  Wiley Interdiscip Rev RNA       Date:  2019-08-20       Impact factor: 9.957

2.  Thermodynamics of long supercoiled molecules: insights from highly efficient Monte Carlo simulations.

Authors:  Thibaut Lepage; François Képès; Ivan Junier
Journal:  Biophys J       Date:  2015-07-07       Impact factor: 4.033

3.  Magnetic Tweezers-Based Single-Molecule Assays to Study Interaction of E. coli SSB with DNA and RecQ Helicase.

Authors:  Debjani Bagchi; Weiting Zhang; Samar Hodeib; Bertrand Ducos; Vincent Croquette; Maria Manosas
Journal:  Methods Mol Biol       Date:  2021

4.  Transcription initiation by human RNA polymerase II visualized at single-molecule resolution.

Authors:  Andrey Revyakin; Zhengjian Zhang; Robert A Coleman; Yan Li; Carla Inouye; Julian K Lucas; Sang-Ryul Park; Steven Chu; Robert Tjian
Journal:  Genes Dev       Date:  2012-07-18       Impact factor: 11.361

5.  Combined Magnetic Tweezers and Micro-mirror Total Internal Reflection Fluorescence Microscope for Single-Molecule Manipulation and Visualization.

Authors:  Yeonee Seol; Keir C Neuman
Journal:  Methods Mol Biol       Date:  2018

6.  Direct Fluorescent Imaging of Translocation and Unwinding by Individual DNA Helicases.

Authors:  T L Pavankumar; J C Exell; S C Kowalczykowski
Journal:  Methods Enzymol       Date:  2016-10-18       Impact factor: 1.600

7.  Model-free 3D localization with precision estimates for brightfield-imaged particles.

Authors:  Daniel T Kovari; David Dunlap; Eric R Weeks; Laura Finzi
Journal:  Opt Express       Date:  2019-10-14       Impact factor: 3.894

8.  Structural Dynamics and Mechanochemical Coupling in DNA Gyrase.

Authors:  Aakash Basu; Angelica C Parente; Zev Bryant
Journal:  J Mol Biol       Date:  2016-03-22       Impact factor: 5.469

9.  TopA, the Sulfolobus solfataricus topoisomerase III, is a decatenase.

Authors:  Anna H Bizard; Xi Yang; Hélène Débat; Jonathan M Fogg; Lynn Zechiedrich; Terence R Strick; Florence Garnier; Marc Nadal
Journal:  Nucleic Acids Res       Date:  2018-01-25       Impact factor: 16.971

10.  Single molecule measurements of DNA helicase activity with magnetic tweezers and t-test based step-finding analysis.

Authors:  Yeonee Seol; Marie-Paule Strub; Keir C Neuman
Journal:  Methods       Date:  2016-04-27       Impact factor: 3.608

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