Literature DB >> 22189359

Time to change how we describe biodiversity.

Andrew R Deans1, Matthew J Yoder, James P Balhoff.   

Abstract

Taxonomists are arguably the most active annotators of the natural world, collecting and publishing millions of phenotype data annually through descriptions of new taxa. By formalizing these data, preferably as they are collected, taxonomists stand to contribute a data set with research potential that rivals or even surpasses genomics. Over a decade of electronic innovation and debate has initiated a revolution in the way that the biodiversity is described. Here, we opine that a new generation of semantically based digital scaffolding, presently in various stages of completeness, and a commitment by taxonomists and their colleagues to undertake this transformation, are required to complete the taxonomic revolution and critically broaden the relevance of its products.
Copyright © 2011 Elsevier Ltd. All rights reserved.

Mesh:

Year:  2011        PMID: 22189359     DOI: 10.1016/j.tree.2011.11.007

Source DB:  PubMed          Journal:  Trends Ecol Evol        ISSN: 0169-5347            Impact factor:   17.712


  35 in total

Review 1.  An empiricist's guide to theoretical predictions on the evolution of dispersal.

Authors:  Anne Duputié; François Massol
Journal:  Interface Focus       Date:  2013-12-06       Impact factor: 3.906

2.  A cybertaxonomic revision of the micro-landsnail genus Plectostoma Adam (Mollusca, Caenogastropoda, Diplommatinidae), from Peninsular Malaysia, Sumatra and Indochina.

Authors:  Thor-Seng Liew; Jaap Jan Vermeulen; Mohammad Effendi Bin Marzuki; Menno Schilthuizen
Journal:  Zookeys       Date:  2014-03-25       Impact factor: 1.546

3.  Reasoning over taxonomic change: exploring alignments for the Perelleschus use case.

Authors:  Nico M Franz; Mingmin Chen; Shizhuo Yu; Parisa Kianmajd; Shawn Bowers; Bertram Ludäscher
Journal:  PLoS One       Date:  2015-02-20       Impact factor: 3.240

4.  Ontologies as integrative tools for plant science.

Authors:  Ramona L Walls; Balaji Athreya; Laurel Cooper; Justin Elser; Maria A Gandolfo; Pankaj Jaiswal; Christopher J Mungall; Justin Preece; Stefan Rensing; Barry Smith; Dennis W Stevenson
Journal:  Am J Bot       Date:  2012-07-30       Impact factor: 3.844

5.  Next-generation phenomics for the Tree of Life.

Authors:  J Gordon Burleigh; Kenzley Alphonse; Andrew J Alverson; Holly M Bik; Carrine Blank; Andrea L Cirranello; Hong Cui; Marymegan Daly; Thomas G Dietterich; Gail Gasparich; Jed Irvine; Matthew Julius; Seth Kaufman; Edith Law; Jing Liu; Lisa Moore; Maureen A O'Leary; Maria Passarotti; Sonali Ranade; Nancy B Simmons; Dennis W Stevenson; Robert W Thacker; Edward C Theriot; Sinisa Todorovic; Paúl M Velazco; Ramona L Walls; Joanna M Wolfe; Mengjie Yu
Journal:  PLoS Curr       Date:  2013-06-26

6.  Micro-computed tomography: Introducing new dimensions to taxonomy.

Authors:  Sarah Faulwetter; Aikaterini Vasileiadou; Michail Kouratoras; Christos Arvanitidis
Journal:  Zookeys       Date:  2013-02-04       Impact factor: 1.546

7.  A semantic model for species description applied to the ensign wasps (hymenoptera: evaniidae) of New Caledonia.

Authors:  James P Balhoff; István Mikó; Matthew J Yoder; Patricia L Mullins; Andrew R Deans
Journal:  Syst Biol       Date:  2013-05-07       Impact factor: 15.683

8.  A unified anatomy ontology of the vertebrate skeletal system.

Authors:  Wasila M Dahdul; James P Balhoff; David C Blackburn; Alexander D Diehl; Melissa A Haendel; Brian K Hall; Hilmar Lapp; John G Lundberg; Christopher J Mungall; Martin Ringwald; Erik Segerdell; Ceri E Van Slyke; Matthew K Vickaryous; Monte Westerfield; Paula M Mabee
Journal:  PLoS One       Date:  2012-12-10       Impact factor: 3.240

9.  High-throughput sequencing: a roadmap toward community ecology.

Authors:  Timothée Poisot; Bérangère Péquin; Dominique Gravel
Journal:  Ecol Evol       Date:  2013-03-11       Impact factor: 2.912

10.  Utilizing descriptive statements from the biodiversity heritage library to expand the Hymenoptera Anatomy Ontology.

Authors:  Katja C Seltmann; Zsolt Pénzes; Matthew J Yoder; Matthew A Bertone; Andrew R Deans
Journal:  PLoS One       Date:  2013-02-18       Impact factor: 3.240

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