| Literature DB >> 22188676 |
Yuan-Mao Zhu1, Zuo Yu, Hong Cai, Yu-Ran Gao, Xiu-Mei Dong, Zhao-Li Li, Hong-Fei Shi, Qing-Feng Meng, Chuang Lu, Fei Xue.
Abstract
BACKGROUND: Bovine adenovirus type 3 (BAV-3) belongs to the Mastadenovirus genus of the family Adenoviridae and is involved in respiratory and enteric infections of calves. The isolation of BAV-3 has not been reported prior to this study in China. In 2009, there were many cases in cattle showing similar clinical signs to BAV-3 infection and a virus strain, showing cytopathic effect in Madin-Darby bovine kidney cells, was isolated from a bovine nasal swab collected from feedlot cattle in Heilongjiang Province, China. The isolate was confirmed as a bovine adenovirus type 3 by PCR and immunofluorescence assay, and named as HLJ0955. So far only the complete genome sequence of prototype of BAV-3 WBR-1 strain has been reported. In order to further characterize the Chinese isolate HLJ0955, the complete genome sequence of HLJ0955 was determined.Entities:
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Year: 2011 PMID: 22188676 PMCID: PMC3265569 DOI: 10.1186/1743-422X-8-557
Source DB: PubMed Journal: Virol J ISSN: 1743-422X Impact factor: 4.099
Figure 1Electron micrograph of the newly isolated BAV-3 strain HLJ0955 in MDBK cell cultures displaying typical adenovirus morphology. Typical virions of approximately 75 nm in diameter were observed (×30, 000).
Summary of the region, name, CDS and length of genes of Chinese BAV-3 HLJ0955 strain and the nucleotide and putative amino acid identities between HLJ0955 and the prototype of BAV-3 WBR-1 strain
| Region | Gene | CDS (HLJ0955) | Gene length (bp) | Nucleotide identity | Amino acid identity |
|---|---|---|---|---|---|
| ITR | ITR | 1-85 | 85 | NDb | ND |
| 34048-34132 | 85 | ND | ND | ||
| E1A | 211R | 560-1169, 1277-1302(join) | 636 | 98.6 | 98.6 |
| E1B | 157R | 1395-1868 | 474 | 98.0 | 98.1 |
| 420R | 1769-3031 | 1263 | 96.4 | 97.9 | |
| pIX | pIX | 3117-3494 | 378 | 94.8 | 97.6 |
| IVa2 | IVa2 | 3531-4661(complementa) | 1131 | 96.3 | 98.1 |
| E2B | Pol | 4640-7711(complement) | 3072 | 95.9 | 96.6 |
| TP | 7930-9882(complement) | 1953 | 83.9 | 94.8 | |
| L1 | 52K | 9912-10907 | 996 | 96.3 | 97.9 |
| IIIA | 11022-12737 | 1716 | 93.0 | 96.8 | |
| III | 12852-14300 | 1449 | 97.5 | 96.5 | |
| pVII | 14363-14878 | 516 | 97.3 | 97.7 | |
| L2 | pV | 14995-16266 | 1272 | 94.1 | 87.6 |
| L3 | pX | 16393-16632 | 240 | 83.6 | 98.8 |
| L4 | pVI | 16792-17586 | 795 | 97.8 | 87.5 |
| L5 | Hexon | 17733-20459 | 2727 | 80.0 | 94.1 |
| Protease | 20488-21102 | 615 | 95.7 | 98.0 | |
| E2A | DBP | 21219-22517(complement) | 1299 | 96.1 | 98.4 |
| L6 | 100K | 22544-25096 | 2553 | 96.5 | 96.0 |
| 33K | 24729-25553 | 825 | 96.9 | 92.7 | |
| pVIII | 25732-26382 | 651 | 97.2 | 97.2 | |
| E3 | 284R | 26441-27295 | 855 | 95.3 | 90.9 |
| 121R | 27306-27671 | 366 | 97.0 | 97.5 | |
| L7 | Fiber | 27898-30828 | 2931 | 93.4 | 92.7 |
| E4 | ORF5 | 30906-31565(complement) | 660 | 97.4 | 97.3 |
| ORF4 | 31504-31935(complement) | 432 | 96.0 | 93.1 | |
| ORF3 | 31957-32763(complement) | 807 | 96.3 | 97.0 | |
| ORF2 | 33028-33237(complement) | 210 | 95.7 | 95.7 | |
| ORF1 | 33250-33675(complement) | 426 | 91.7 | 90.8 | |
a represents complimentary strand; b represents "not done"
Figure 2Phylogenetic analysis of the complete genome was created using the complete genome sequence of the HLJ0955 isolate in this work, and 14 BAVs and adenovirus reference strains from other animals or human beings retrieved from GenBank (A, the complete genome). Phylogenetic analysis of the DBP gene was created using the nucleotide sequences of the Chinese BAV-3 isolate HLJ0955 in this work, and 22 BAVs and adenovirus reference strains from other animals or human beings retrieved from GenBank (B, DBP gene). The phylogenetic tree was prepared using the Neighbor-Joining method and bootstrap testing. Numbers over branches indicate the percentage of 1000 bootstrap replicates that support each phylogenetic branch. The GenBank accession numbers of adenovirus reference strains are as follows: BAV-1 (NC_006324), BAV-2 (AF252854), BAV-3 strain WBR-1 (AF030154), BAV-4 (AF036092), canine adenovirus-1 (CAV-1) (AC_000003), CAV-2 (U77082), duck adenovirus-1 (DAV-1) (AC_000004), fowl adenovirus-1 (FAV-1) (AC_000014), FAV-8 (AF083975), FAV-9 (AF083975), frog adenovirus-1 (FrAV-1) (NC_002501), human adenovirus-2 (HAV-2) (AC_000007), HAV-3 (DQ086466), HAV-6 (FJ349096), HAV-7 (AY594256), ovine adenovirus-7 (OAV-7) (U40839), porcine adenovirus-3 (PAV-3) (AF083132), PAV-5 (AF289262), raptor adenovirus-1(RAV-1) (NC_015455), snake adenovirus-1 (SAV-1) (DQ106414), turkey adenovirus-1 (TAV-1) (NC_014564), TAV-3 (AC_000016).