Literature DB >> 22182668

Application of genomics to field investigations of malaria by the international centers of excellence for malaria research.

Sarah K Volkman1, Daouda Ndiaye, Mahamadou Diakite, Ousmane A Koita, Davis Nwakanma, Rachel F Daniels, Daniel J Park, Daniel E Neafsey, Marc A T Muskavitch, Donald J Krogstad, Pardis C Sabeti, Daniel L Hartl, Dyann F Wirth.   

Abstract

Success of the global research agenda toward eradication of malaria will depend on development of new tools, including drugs, vaccines, insecticides and diagnostics. Genomic information, now available for the malaria parasites, their mosquito vectors, and human host, can be leveraged to both develop these tools and monitor their effectiveness. Although knowledge of genomic sequences for the malaria parasites, Plasmodium falciparum and Plasmodium vivax, have helped advance our understanding of malaria biology, simply knowing this sequence information has not yielded a plethora of new interventions to reduce the burden of malaria. Here we review and provide specific examples of how genomic information has increased our knowledge of parasite biology, focusing on P. falciparum malaria. We then discuss how population genetics can be applied toward the epidemiological and transmission-related goals outlined by the International Centers of Excellence for Malaria Research groups recently established by the National Institutes of Health. Finally, we propose genomics is a research area that can promote coordination and collaboration between various ICEMR groups, and that working together as a community can significantly advance the value of this information toward reduction of the global malaria burden. Copyright Â
© 2011 Elsevier B.V. All rights reserved.

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Year:  2011        PMID: 22182668      PMCID: PMC3294120          DOI: 10.1016/j.actatropica.2011.12.002

Source DB:  PubMed          Journal:  Acta Trop        ISSN: 0001-706X            Impact factor:   3.112


  144 in total

1.  Inhibitors of the nonmevalonate pathway of isoprenoid biosynthesis as antimalarial drugs.

Authors:  H Jomaa; J Wiesner; S Sanderbrand; B Altincicek; C Weidemeyer; M Hintz; I Türbachova; M Eberl; J Zeidler; H K Lichtenthaler; D Soldati; E Beck
Journal:  Science       Date:  1999-09-03       Impact factor: 47.728

2.  Plasmodium falciparum Na+/H+ exchanger activity and quinine resistance.

Authors:  Tyler N Bennett; Jigar Patel; Michael T Ferdig; Paul D Roepe
Journal:  Mol Biochem Parasitol       Date:  2007-02-08       Impact factor: 1.759

3.  Duplication, gene conversion, and genetic diversity in the species-specific acyl-CoA synthetase gene family of Plasmodium falciparum.

Authors:  Lara L Bethke; Martine Zilversmit; Kaare Nielsen; Johanna Daily; Sarah K Volkman; Daouda Ndiaye; Elena R Lozovsky; Daniel L Hartl; Dyann F Wirth
Journal:  Mol Biochem Parasitol       Date:  2006-07-10       Impact factor: 1.759

4.  Comparative genomics of the neglected human malaria parasite Plasmodium vivax.

Authors:  Jane M Carlton; John H Adams; Joana C Silva; Shelby L Bidwell; Hernan Lorenzi; Elisabet Caler; Jonathan Crabtree; Samuel V Angiuoli; Emilio F Merino; Paolo Amedeo; Qin Cheng; Richard M R Coulson; Brendan S Crabb; Hernando A Del Portillo; Kobby Essien; Tamara V Feldblyum; Carmen Fernandez-Becerra; Paul R Gilson; Amy H Gueye; Xiang Guo; Simon Kang'a; Taco W A Kooij; Michael Korsinczky; Esmeralda V-S Meyer; Vish Nene; Ian Paulsen; Owen White; Stuart A Ralph; Qinghu Ren; Tobias J Sargeant; Steven L Salzberg; Christian J Stoeckert; Steven A Sullivan; Marcio M Yamamoto; Stephen L Hoffman; Jennifer R Wortman; Malcolm J Gardner; Mary R Galinski; John W Barnwell; Claire M Fraser-Liggett
Journal:  Nature       Date:  2008-10-09       Impact factor: 49.962

Review 5.  Molecular epidemiology of malaria.

Authors:  David J Conway
Journal:  Clin Microbiol Rev       Date:  2007-01       Impact factor: 26.132

6.  In vitro susceptibility to quinine and microsatellite variations of the Plasmodium falciparum Na+/H+ exchanger (Pfnhe-1) gene: the absence of association in clinical isolates from the Republic of Congo.

Authors:  Sébastien Briolant; Stéphane Pelleau; Hervé Bogreau; Philippe Hovette; Agnès Zettor; Jacky Castello; Eric Baret; Rémy Amalvict; Christophe Rogier; Bruno Pradines
Journal:  Malar J       Date:  2011-02-11       Impact factor: 2.979

7.  Quantitative trait loci mapping reveals candidate pathways regulating cell cycle duration in Plasmodium falciparum.

Authors:  Heather B Reilly Ayala; Mark A Wacker; Geoffrey Siwo; Michael T Ferdig
Journal:  BMC Genomics       Date:  2010-10-18       Impact factor: 3.969

8.  High recombination rates and hotspots in a Plasmodium falciparum genetic cross.

Authors:  Hongying Jiang; Na Li; Vivek Gopalan; Martine M Zilversmit; Sudhir Varma; Vijayaraj Nagarajan; Jian Li; Jianbing Mu; Karen Hayton; Bruce Henschen; Ming Yi; Robert Stephens; Gilean McVean; Philip Awadalla; Thomas E Wellems; Xin-zhuan Su
Journal:  Genome Biol       Date:  2011-04-04       Impact factor: 13.583

9.  Comparative transcriptional and genomic analysis of Plasmodium falciparum field isolates.

Authors:  Margaret J Mackinnon; Jinguang Li; Sachel Mok; Moses M Kortok; Kevin Marsh; Peter R Preiser; Zbynek Bozdech
Journal:  PLoS Pathog       Date:  2009-10-30       Impact factor: 6.823

10.  Detection of knockdown resistance (kdr) mutations in Anopheles gambiae: a comparison of two new high-throughput assays with existing methods.

Authors:  Chris Bass; Dimitra Nikou; Martin J Donnelly; Martin S Williamson; Hilary Ranson; Amanda Ball; John Vontas; Linda M Field
Journal:  Malar J       Date:  2007-08-13       Impact factor: 2.979

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  14 in total

Review 1.  Advances in genetics and genomics: use and limitations in achieving malaria elimination goals.

Authors:  Sharmini Gunawardena; Nadira D Karunaweera
Journal:  Pathog Glob Health       Date:  2015-05       Impact factor: 2.894

2.  Malaria diagnostics and surveillance in the post-genomic era.

Authors:  N W Lucchi; J Oberstaller; J C Kissinger; V Udhayakumar
Journal:  Public Health Genomics       Date:  2013-03-18       Impact factor: 2.000

3.  Clonal outbreak of Plasmodium falciparum infection in eastern Panama.

Authors:  Nicanor Obaldia; Nicholas K Baro; Jose E Calzada; Ana M Santamaria; Rachel Daniels; Wesley Wong; Hsiao-Han Chang; Elizabeth J Hamilton; Myriam Arevalo-Herrera; Socrates Herrera; Dyann F Wirth; Daniel L Hartl; Matthias Marti; Sarah K Volkman
Journal:  J Infect Dis       Date:  2014-10-21       Impact factor: 5.226

4.  Prospective surveillance study to detect antimalarial drug resistance, gene deletions of diagnostic relevance and genetic diversity of Plasmodium falciparum in Mozambique: protocol.

Authors:  Alfredo Mayor; Clemente da Silva; Eduard Rovira-Vallbona; Arantxa Roca-Feltrer; Craig Bonnington; Alexandra Wharton-Smith; Bryan Greenhouse; Caitlin Bever; Arlindo Chidimatembue; Caterina Guinovart; Joshua L Proctor; Maria Rodrigues; Neide Canana; Paulo Arnaldo; Simone Boene; Pedro Aide; Sonia Enosse; Francisco Saute; Baltazar Candrinho
Journal:  BMJ Open       Date:  2022-07-12       Impact factor: 3.006

Review 5.  Molecular epidemiology, phylogeny and evolution of the filarial nematode Wuchereria bancrofti.

Authors:  Scott T Small; Daniel J Tisch; Peter A Zimmerman
Journal:  Infect Genet Evol       Date:  2014-08-29       Impact factor: 3.342

6.  Comparative analysis of the profiles of IgG subclass-specific responses to Plasmodium falciparum apical membrane antigen-1 and merozoite surface protein-1 in naturally exposed individuals living in malaria hypoendemic settings, Iran.

Authors:  Maryam Rouhani; Sedigheh Zakeri; Akram A Mehrizi; Navid D Djadid
Journal:  Malar J       Date:  2015-02-05       Impact factor: 2.979

7.  Foreword: International Centers of Excellence for Malaria Research.

Authors:  Malla R Rao
Journal:  Am J Trop Med Hyg       Date:  2015-09       Impact factor: 2.345

8.  Malaria Molecular Epidemiology: Lessons from the International Centers of Excellence for Malaria Research Network.

Authors:  Ananias A Escalante; Marcelo U Ferreira; Joseph M Vinetz; Sarah K Volkman; Liwang Cui; Dionicia Gamboa; Donald J Krogstad; Alyssa E Barry; Jane M Carlton; Anna Maria van Eijk; Khageswar Pradhan; Ivo Mueller; Bryan Greenhouse; M Andreina Pacheco; Andres F Vallejo; Socrates Herrera; Ingrid Felger
Journal:  Am J Trop Med Hyg       Date:  2015-08-10       Impact factor: 2.345

9.  Population Genetics of Plasmodium vivax in the Peruvian Amazon.

Authors:  Christopher Delgado-Ratto; Dionicia Gamboa; Veronica E Soto-Calle; Peter Van den Eede; Eliana Torres; Luis Sánchez-Martínez; Juan Contreras-Mancilla; Anna Rosanas-Urgell; Hugo Rodriguez Ferrucci; Alejandro Llanos-Cuentas; Annette Erhart; Jean-Pierre Van Geertruyden; Umberto D'Alessandro
Journal:  PLoS Negl Trop Dis       Date:  2016-01-14

10.  Population genetic structure and natural selection of Plasmodium falciparum apical membrane antigen-1 in Myanmar isolates.

Authors:  Jung-Mi Kang; Jinyoung Lee; Mya Moe; Hojong Jun; Hương Giang Lê; Tae Im Kim; Thị Lam Thái; Woon-Mok Sohn; Moe Kyaw Myint; Khin Lin; Ho-Joon Shin; Tong-Soo Kim; Byoung-Kuk Na
Journal:  Malar J       Date:  2018-02-07       Impact factor: 2.979

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