Literature DB >> 22182019

New method for parameter estimation in probabilistic models: minimum probability flow.

Jascha Sohl-Dickstein1, Peter B Battaglino, Michael R DeWeese.   

Abstract

Fitting probabilistic models to data is often difficult, due to the general intractability of the partition function. We propose a new parameter fitting method, minimum probability flow (MPF), which is applicable to any parametric model. We demonstrate parameter estimation using MPF in two cases: a continuous state space model, and an Ising spin glass. In the latter case, MPF outperforms current techniques by at least an order of magnitude in convergence time with lower error in the recovered coupling parameters.

Mesh:

Year:  2011        PMID: 22182019     DOI: 10.1103/PhysRevLett.107.220601

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  16 in total

1.  Network inference in stochastic systems from neurons to currencies: Improved performance at small sample size.

Authors:  Danh-Tai Hoang; Juyong Song; Vipul Periwal; Junghyo Jo
Journal:  Phys Rev E       Date:  2019-02       Impact factor: 2.529

2.  Predicting reaction coordinates in energy landscapes with diffusion anisotropy.

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3.  Missing mass approximations for the partition function of stimulus driven Ising models.

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Journal:  Front Comput Neurosci       Date:  2013-07-24       Impact factor: 2.380

4.  Optogenetic activation of an inhibitory network enhances feedforward functional connectivity in auditory cortex.

Authors:  Liberty S Hamilton; Jascha Sohl-Dickstein; Alexander G Huth; Vanessa M Carels; Karl Deisseroth; Shaowen Bao
Journal:  Neuron       Date:  2013-11-20       Impact factor: 17.173

5.  Approximate Inference for Time-Varying Interactions and Macroscopic Dynamics of Neural Populations.

Authors:  Christian Donner; Klaus Obermayer; Hideaki Shimazaki
Journal:  PLoS Comput Biol       Date:  2017-01-17       Impact factor: 4.475

Review 6.  Energy landscape analysis of neuroimaging data.

Authors:  Takahiro Ezaki; Takamitsu Watanabe; Masayuki Ohzeki; Naoki Masuda
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2017-06-28       Impact factor: 4.226

7.  Density-based clustering: A 'landscape view' of multi-channel neural data for inference and dynamic complexity analysis.

Authors:  Gabriel Baglietto; Guido Gigante; Paolo Del Giudice
Journal:  PLoS One       Date:  2017-04-03       Impact factor: 3.240

8.  Robust Exponential Memory in Hopfield Networks.

Authors:  Christopher J Hillar; Ngoc M Tran
Journal:  J Math Neurosci       Date:  2018-01-16       Impact factor: 1.300

9.  Modeling higher-order correlations within cortical microcolumns.

Authors:  Urs Köster; Jascha Sohl-Dickstein; Charles M Gray; Bruno A Olshausen
Journal:  PLoS Comput Biol       Date:  2014-07-03       Impact factor: 4.475

10.  Kernel Architecture of the Genetic Circuitry of the Arabidopsis Circadian System.

Authors:  Mathias Foo; David E Somers; Pan-Jun Kim
Journal:  PLoS Comput Biol       Date:  2016-02-01       Impact factor: 4.475

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