Literature DB >> 22181779

Locating the barrier for folding of single molecules under an external force.

Olga K Dudko1, Thomas G W Graham, Robert B Best.   

Abstract

Single-molecule pulling experiments on the folding of biomolecules are usually interpreted with one-dimensional models in which the dynamics occurs on the "pulling coordinate." Paradoxically, the free-energy profile along this coordinate may lack a refolding barrier, yet a barrier is known to exist for folding; thus, it has been argued that pulling experiments do not probe folding. Here, we show that transitions monitored in pulling experiments probe the true folding barrier but that the barrier may be hidden in the projection onto the pulling coordinate. However, one-dimensional theory using the pulling coordinate still yields physically meaningful energy landscape parameters.

Mesh:

Substances:

Year:  2011        PMID: 22181779     DOI: 10.1103/PhysRevLett.107.208301

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  26 in total

1.  On artifacts in single-molecule force spectroscopy.

Authors:  Pilar Cossio; Gerhard Hummer; Attila Szabo
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-04       Impact factor: 11.205

2.  Catch bond-like kinetics of helix cracking: network analysis by molecular dynamics and milestoning.

Authors:  Steven M Kreuzer; Tess J Moon; Ron Elber
Journal:  J Chem Phys       Date:  2013-09-28       Impact factor: 3.488

3.  Rate limit of protein elastic response is tether dependent.

Authors:  Ronen Berkovich; Rodolfo I Hermans; Ionel Popa; Guillaume Stirnemann; Sergi Garcia-Manyes; Bruce J Berne; Julio M Fernandez
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-15       Impact factor: 11.205

4.  Diffusive Dynamics of Contact Formation in Disordered Polypeptides.

Authors:  Gül H Zerze; Jeetain Mittal; Robert B Best
Journal:  Phys Rev Lett       Date:  2016-02-11       Impact factor: 9.161

5.  Capturing transition paths and transition states for conformational rearrangements in the ribosome.

Authors:  Jeffrey K Noel; Jorge Chahine; Vitor B P Leite; Paul Charles Whitford
Journal:  Biophys J       Date:  2014-12-16       Impact factor: 4.033

6.  Connecting thermal and mechanical protein (un)folding landscapes.

Authors:  Li Sun; Jeffrey K Noel; Joanna I Sulkowska; Herbert Levine; José N Onuchic
Journal:  Biophys J       Date:  2014-12-16       Impact factor: 4.033

7.  Extracting intrinsic dynamic parameters of biomolecular folding from single-molecule force spectroscopy experiments.

Authors:  Gi-Moon Nam; Dmitrii E Makarov
Journal:  Protein Sci       Date:  2015-07-14       Impact factor: 6.725

8.  Reconstructing folding energy landscapes from splitting probability analysis of single-molecule trajectories.

Authors:  Ajay P Manuel; John Lambert; Michael T Woodside
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-26       Impact factor: 11.205

9.  Ligand-induced changes of the apparent transition-state position in mechanical protein unfolding.

Authors:  Johannes Stigler; Matthias Rief
Journal:  Biophys J       Date:  2015-07-21       Impact factor: 4.033

10.  Energy landscape analysis of native folding of the prion protein yields the diffusion constant, transition path time, and rates.

Authors:  Hao Yu; Amar Nath Gupta; Xia Liu; Krishna Neupane; Angela M Brigley; Iveta Sosova; Michael T Woodside
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-20       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.