Literature DB >> 22181254

Stochastic reaction and diffusion on growing domains: understanding the breakdown of robust pattern formation.

Thomas E Woolley1, Ruth E Baker, Eamonn A Gaffney, Philip K Maini.   

Abstract

Many biological patterns, from population densities to animal coat markings, can be thought of as heterogeneous spatiotemporal distributions of mobile agents. Many mathematical models have been proposed to account for the emergence of this complexity, but, in general, they have consisted of deterministic systems of differential equations, which do not take into account the stochastic nature of population interactions. One particular, pertinent criticism of these deterministic systems is that the exhibited patterns can often be highly sensitive to changes in initial conditions, domain geometry, parameter values, etc. Due to this sensitivity, we seek to understand the effects of stochasticity and growth on paradigm biological patterning models. In this paper, we extend spatial Fourier analysis and growing domain mapping techniques to encompass stochastic Turing systems. Through this we find that the stochastic systems are able to realize much richer dynamics than their deterministic counterparts, in that patterns are able to exist outside the standard Turing parameter range. Further, it is seen that the inherent stochasticity in the reactions appears to be more important than the noise generated by growth, when considering which wave modes are excited. Finally, although growth is able to generate robust pattern sequences in the deterministic case, we see that stochastic effects destroy this mechanism for conferring robustness. However, through Fourier analysis we are able to suggest a reason behind this lack of robustness and identify possible mechanisms by which to reclaim it.

Mesh:

Year:  2011        PMID: 22181254     DOI: 10.1103/PhysRevE.84.046216

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  18 in total

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3.  Turing's model for biological pattern formation and the robustness problem.

Authors:  Philip K Maini; Thomas E Woolley; Ruth E Baker; Eamonn A Gaffney; S Seirin Lee
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6.  Incorporating domain growth into hybrid methods for reaction-diffusion systems.

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7.  Isolating Patterns in Open Reaction-Diffusion Systems.

Authors:  Andrew L Krause; Václav Klika; Philip K Maini; Denis Headon; Eamonn A Gaffney
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8.  Path-integral methods for analyzing the effects of fluctuations in stochastic hybrid neural networks.

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Journal:  J Math Neurosci       Date:  2015-02-27       Impact factor: 1.300

9.  EPHA2-dependent outcompetition of KRASG12D mutant cells by wild-type neighbors in the adult pancreas.

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Journal:  Curr Biol       Date:  2021-04-22       Impact factor: 10.834

10.  Stochastic simulations of pattern formation in excitable media.

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Journal:  PLoS One       Date:  2012-08-10       Impact factor: 3.240

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