Literature DB >> 22181100

Building macroscale models from microscale probabilistic models: a general probabilistic approach for nonlinear diffusion and multispecies phenomena.

Catherine J Penington1, Barry D Hughes, Kerry A Landman.   

Abstract

A discrete agent-based model on a periodic lattice of arbitrary dimension is considered. Agents move to nearest-neighbor sites by a motility mechanism accounting for general interactions, which may include volume exclusion. The partial differential equation describing the average occupancy of the agent population is derived systematically. A diffusion equation arises for all types of interactions and is nonlinear except for the simplest interactions. In addition, multiple species of interacting subpopulations give rise to an advection-diffusion equation for each subpopulation. This work extends and generalizes previous specific results, providing a construction method for determining the transport coefficients in terms of a single conditional transition probability, which depends on the occupancy of sites in an influence region. These coefficients characterize the diffusion of agents in a crowded environment in biological and physical processes.

Year:  2011        PMID: 22181100     DOI: 10.1103/PhysRevE.84.041120

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  11 in total

1.  Bridging the gap between individual-based and continuum models of growing cell populations.

Authors:  Mark A J Chaplain; Tommaso Lorenzi; Fiona R Macfarlane
Journal:  J Math Biol       Date:  2019-06-10       Impact factor: 2.259

2.  The importance of volume exclusion in modelling cellular migration.

Authors:  Louise Dyson; Ruth E Baker
Journal:  J Math Biol       Date:  2014-09-28       Impact factor: 2.259

3.  Multiscale Modeling of Diffusion in a Crowded Environment.

Authors:  Lina Meinecke
Journal:  Bull Math Biol       Date:  2017-09-18       Impact factor: 1.758

4.  From a discrete model of chemotaxis with volume-filling to a generalized Patlak-Keller-Segel model.

Authors:  Federica Bubba; Tommaso Lorenzi; Fiona R Macfarlane
Journal:  Proc Math Phys Eng Sci       Date:  2020-05-13       Impact factor: 2.704

5.  Excluded volume effects in on- and off-lattice reaction-diffusion models.

Authors:  Lina Meinecke; Markus Eriksson
Journal:  IET Syst Biol       Date:  2017-04       Impact factor: 1.615

6.  Macromolecular crowding directs the motion of small molecules inside cells.

Authors:  Stephen Smith; Claudia Cianci; Ramon Grima
Journal:  J R Soc Interface       Date:  2017-06       Impact factor: 4.118

7.  Distinguishing cell shoving mechanisms.

Authors:  Pingyu Nan; Darragh M Walsh; Kerry A Landman; Barry D Hughes
Journal:  PLoS One       Date:  2018-03-12       Impact factor: 3.240

8.  The impact of exclusion processes on angiogenesis models.

Authors:  Samara Pillay; Helen M Byrne; Philip K Maini
Journal:  J Math Biol       Date:  2018-03-06       Impact factor: 2.259

9.  The exact phase diagram for a class of open multispecies asymmetric exclusion processes.

Authors:  Arvind Ayyer; Dipankar Roy
Journal:  Sci Rep       Date:  2017-10-19       Impact factor: 4.379

10.  Modelling collective cell migration: neural crest as a model paradigm.

Authors:  Rasa Giniūnaitė; Ruth E Baker; Paul M Kulesa; Philip K Maini
Journal:  J Math Biol       Date:  2019-10-05       Impact factor: 2.259

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