Literature DB >> 22180906

Folding of a single-chain, information-rich polypeptoid sequence into a highly ordered nanosheet.

Romas Kudirka1, Helen Tran, Babak Sanii, Ki Tae Nam, Philip H Choi, Neeraja Venkateswaran, Ritchie Chen, Stephen Whitelam, Ronald N Zuckermann.   

Abstract

The design and synthesis of protein-like polymers is a fundamental challenge in materials science. A means to achieve this goal is to create synthetic polymers of defined sequence where all relevant folding information is incorporated into a single polymer strand. We present here the aqueous self-assembly of peptoid polymers (N-substituted glycines) into ultrathin, two-dimensional highly ordered nanosheets, where all folding information is encoded into a single chain. The sequence designs enforce a two-fold amphiphilic periodicity. Two sequences were considered: one with charged residues alternately positive and negative (alternating patterning), and one with charges segregated in positive and negative halves of the molecule (block patterning). Sheets form between pH 5 and 10 with the optimal conditions being pH 6 for the alternating sequence and pH 8 for the block sequence. Once assembled, the nanosheets remain stable between pH 6 and 10 with observed degradation beginning to occur below pH 6. The alternating charge nanosheets remain stable up to concentrations of 20% acetonitrile, whereas the block pattern displayed greater robustness remaining stable up to 30% acetonitrile. These observations are consistent with expectations based on considerations of the molecules' electrostatic interactions. This study represents an important step in the construction of abiotic materials founded on biological informatic and folding principles.

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Year:  2011        PMID: 22180906     DOI: 10.1002/bip.21590

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  11 in total

1.  Characterizing hydrophobicity of amino acid side chains in a protein environment via measuring contact angle of a water nanodroplet on planar peptide network.

Authors:  Chongqin Zhu; Yurui Gao; Hui Li; Sheng Meng; Lei Li; Joseph S Francisco; Xiao Cheng Zeng
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-01       Impact factor: 11.205

2.  Construction and conformational behavior of peptoids with cis-amide bond geometry: design of a peptoid with alternate φ, ψ values of inverse PP-II/PP-II and PP-I structures.

Authors:  Fateh Singh Nandel; Radhika Rani Jaswal; Avneet Saini; Vibhuti Nandel; Mohd Shafique
Journal:  J Mol Model       Date:  2014-08-31       Impact factor: 1.810

3.  Assembly and molecular order of two-dimensional peptoid nanosheets through the oil-water interface.

Authors:  Ellen J Robertson; Gloria K Oliver; Menglu Qian; Caroline Proulx; Ronald N Zuckermann; Geraldine L Richmond
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-02       Impact factor: 11.205

4.  Self-Assembly of an α-Helical Peptide into a Crystalline Two-Dimensional Nanoporous Framework.

Authors:  Elizabeth L Magnotti; Spencer A Hughes; Rebecca S Dillard; Shengyuan Wang; Lillian Hough; Arshad Karumbamkandathil; Tianquan Lian; Joseph S Wall; Xiaobing Zuo; Elizabeth R Wright; Vincent P Conticello
Journal:  J Am Chem Soc       Date:  2016-12-12       Impact factor: 15.419

5.  Geared Toward Applications: A Perspective on Functional Sequence-Controlled Polymers.

Authors:  Cangjie Yang; Kevin B Wu; Yu Deng; Jingsong Yuan; Jia Niu
Journal:  ACS Macro Lett       Date:  2021-01-20       Impact factor: 6.903

6.  Conformations of peptoids in nanosheets result from the interplay of backbone energetics and intermolecular interactions.

Authors:  John R Edison; Ryan K Spencer; Glenn L Butterfoss; Benjamin C Hudson; Allon I Hochbaum; Anant K Paravastu; Ronald N Zuckermann; Stephen Whitelam
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-14       Impact factor: 11.205

Review 7.  Self-assembled two-dimensional protein arrays in bionanotechnology: from S-layers to designed lattices.

Authors:  François Baneyx; James F Matthaei
Journal:  Curr Opin Biotechnol       Date:  2013-11-25       Impact factor: 9.740

8.  Solid-phase submonomer synthesis of peptoid polymers and their self-assembly into highly-ordered nanosheets.

Authors:  Helen Tran; Sarah L Gael; Michael D Connolly; Ronald N Zuckermann
Journal:  J Vis Exp       Date:  2011-11-02       Impact factor: 1.355

9.  Structural Diversity of Peptoids: Tube-Like Structures of Macrocycles.

Authors:  Claudine Nicole Herlan; Katharina Sommer; Patrick Weis; Martin Nieger; Stefan Bräse
Journal:  Molecules       Date:  2020-12-31       Impact factor: 4.411

10.  Thermodynamic and Kinetic Parameters for Calcite Nucleation on Peptoid and Model Scaffolds: A Step toward Nacre Mimicry.

Authors:  Anne R Nielsen; Stanislav Jelavić; Daniel Murray; Behzad Rad; Martin P Andersson; Marcel Ceccato; Andrew C Mitchell; Susan L S Stipp; Ronald N Zuckermann; Karina K Sand
Journal:  Cryst Growth Des       Date:  2020-04-24       Impact factor: 4.076

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