Literature DB >> 22180734

Development of force field parameters for molecular simulation of polylactide.

James H McAliley1, David A Bruce.   

Abstract

Polylactide is a biodegradable polymer that is widely used for biomedical applications, and it is a replacement for some petroleum based polymers in applications that range from packaging to carpeting. Efforts to characterize and further enhance polylactide based systems using molecular simulations have to this point been hindered by the lack of accurate atomistic models for the polymer. Thus, we present force field parameters specifically suited for molecular modeling of PLA. The model, which we refer to as PLAFF3, is based on a combination of the OPLS and CHARMM force fields, with modifications to bonded and nonbonded parameters. Dihedral angle parameters were adjusted to reproduce DFT data using newly developed CMAP dihedral cross terms, and the model was further adjusted to reproduce experimentally resolved crystal structure conformations, melt density, volume expansivity, and the glass transition temperature of PLA. We recommend the use of PLAFF3 in modeling PLA in its crystalline or amorphous states and have provided the necessary input files required for the publicly available molecular dynamics code GROMACS.

Entities:  

Year:  2011        PMID: 22180734      PMCID: PMC3237685          DOI: 10.1021/ct200251x

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  11 in total

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2.  GROMACS: fast, flexible, and free.

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3.  Continuum electrostatics for electronic structure calculations in bulk amorphous polymers: application to polylactide.

Authors:  James H McAliley; Christopher P O'Brien; David A Bruce
Journal:  J Phys Chem A       Date:  2008-07-16       Impact factor: 2.781

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6.  Synthetic biodegradable polymers as orthopedic devices.

Authors:  J C Middleton; A J Tipton
Journal:  Biomaterials       Date:  2000-12       Impact factor: 12.479

7.  Atomic co-ordinates for an alpha-helix: refinement of the crystal structure of alpha-poly-l-alanine.

Authors:  S Arnott; A J Wonacott
Journal:  J Mol Biol       Date:  1966-11-14       Impact factor: 5.469

8.  Implementation of the CHARMM Force Field in GROMACS: Analysis of Protein Stability Effects from Correction Maps, Virtual Interaction Sites, and Water Models.

Authors:  Pär Bjelkmar; Per Larsson; Michel A Cuendet; Berk Hess; Erik Lindahl
Journal:  J Chem Theory Comput       Date:  2010-01-25       Impact factor: 6.006

9.  Glass transition of polymers: atomistic simulation versus experiments.

Authors:  Armand Soldera; Noureddine Metatla
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-12-28

Review 10.  An overview of polylactides as packaging materials.

Authors:  Rafael Auras; Bruce Harte; Susan Selke
Journal:  Macromol Biosci       Date:  2004-09-16       Impact factor: 4.979

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  4 in total

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Authors:  Bilal Ahmad; Anindyajit Banerjee; Harshita Tiwari; Shrabasti Jana; Sudeshna Bose; Saikat Chakrabarti
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2.  Optimal Solution to the Torsional Coefficient Fitting Problem in Force Field Parametrization.

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3.  Nanoparticle Shape Influence over Poly(lactic acid) Barrier Properties by Molecular Dynamics Simulations.

Authors:  Alejandro Prada; Rafael I González; María B Camarada; Sebastián Allende; Alejandra Torres; Javiera Sepúlveda; Javier Rojas-Nunez; Samuel E Baltazar
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Review 4.  Application of Various Molecular Modelling Methods in the Study of Estrogens and Xenoestrogens.

Authors:  Anna Helena Mazurek; Łukasz Szeleszczuk; Thomas Simonson; Dariusz Maciej Pisklak
Journal:  Int J Mol Sci       Date:  2020-09-03       Impact factor: 5.923

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