Literature DB >> 22180690

Binary Time Series Modeling with Application to Adhesion Frequency Experiments.

Ying Hung1, Veronika Zarnitsyna, Yan Zhang, Cheng Zhu, C F Jeff Wu.   

Abstract

Repeated adhesion frequency assay is the only published method for measuring the kinetic rates of cell adhesion. Cell adhesion plays an important role in many physiological and pathological processes. Traditional analysis of adhesion frequency experiments assumes that the adhesion test cycles are independent Bernoulli trials. This assumption can often be violated in practice. Motivated by the analysis of repeated adhesion tests, a binary time series model incorporating random effects is developed in this paper. A goodness-of-fit statistic is introduced to assess the adequacy of distribution assumptions on the dependent binary data with random effects. The asymptotic distribution of the goodness-of-fit statistic is derived and its finite-sample performance is examined via a simulation study. Application of the proposed methodology to real data from a T-cell experiment reveals some interesting information, including the dependency between repeated adhesion tests.

Entities:  

Year:  2008        PMID: 22180690      PMCID: PMC3237689          DOI: 10.1198/016214508000000508

Source DB:  PubMed          Journal:  J Am Stat Assoc        ISSN: 0162-1459            Impact factor:   5.033


  7 in total

Review 1.  Single-molecule biomechanics with optical methods.

Authors:  A D Mehta; M Rief; J A Spudich; D A Smith; R M Simmons
Journal:  Science       Date:  1999-03-12       Impact factor: 47.728

Review 2.  Measuring receptor/ligand interaction at the single-bond level: experimental and interpretative issues.

Authors:  Cheng Zhu; Mian Long; Scott E Chesla; Pierre Bongrand
Journal:  Ann Biomed Eng       Date:  2002-03       Impact factor: 3.934

3.  Direct observation of catch bonds involving cell-adhesion molecules.

Authors:  Bryan T Marshall; Mian Long; James W Piper; Tadayuki Yago; Rodger P McEver; Cheng Zhu
Journal:  Nature       Date:  2003-05-08       Impact factor: 49.962

4.  Memory in receptor-ligand-mediated cell adhesion.

Authors:  Veronika I Zarnitsyna; Jun Huang; Fang Zhang; Yuan-Hung Chien; Deborah Leckband; Cheng Zhu
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-08       Impact factor: 11.205

5.  Measuring two-dimensional receptor-ligand binding kinetics by micropipette.

Authors:  S E Chesla; P Selvaraj; C Zhu
Journal:  Biophys J       Date:  1998-09       Impact factor: 4.033

6.  Markov regression models for time series: a quasi-likelihood approach.

Authors:  S L Zeger; B Qaqish
Journal:  Biometrics       Date:  1988-12       Impact factor: 2.571

7.  Time series models based on generalized linear models: some further results.

Authors:  W K Li
Journal:  Biometrics       Date:  1994-06       Impact factor: 2.571

  7 in total
  2 in total

1.  Modeling Intensive Polytomous Time-Series Eye-Tracking Data: A Dynamic Tree-Based Item Response Model.

Authors:  Sun-Joo Cho; Sarah Brown-Schmidt; Paul De Boeck; Jianhong Shen
Journal:  Psychometrika       Date:  2020-02-21       Impact factor: 2.500

2.  Autoregressive Generalized Linear Mixed Effect Models with Crossed Random Effects: An Application to Intensive Binary Time Series Eye-Tracking Data.

Authors:  Sun-Joo Cho; Sarah Brown-Schmidt; Woo-Yeol Lee
Journal:  Psychometrika       Date:  2018-02-07       Impact factor: 2.500

  2 in total

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