Literature DB >> 22179551

Principles for applying optogenetic tools derived from direct comparative analysis of microbial opsins.

Joanna Mattis1, Kay M Tye, Emily A Ferenczi, Charu Ramakrishnan, Daniel J O'Shea, Rohit Prakash, Lisa A Gunaydin, Minsuk Hyun, Lief E Fenno, Viviana Gradinaru, Ofer Yizhar, Karl Deisseroth.   

Abstract

Diverse optogenetic tools have allowed versatile control over neural activity. Many depolarizing and hyperpolarizing tools have now been developed in multiple laboratories and tested across different preparations, presenting opportunities but also making it difficult to draw direct comparisons. This challenge has been compounded by the dependence of performance on parameters such as vector, promoter, expression time, illumination, cell type and many other variables. As a result, it has become increasingly complicated for end users to select the optimal reagents for their experimental needs. For a rapidly growing field, critical figures of merit should be formalized both to establish a framework for further development and so that end users can readily understand how these standardized parameters translate into performance. Here we systematically compared microbial opsins under matched experimental conditions to extract essential principles and identify key parameters for the conduct, design and interpretation of experiments involving optogenetic techniques.

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Year:  2011        PMID: 22179551      PMCID: PMC4165888          DOI: 10.1038/nmeth.1808

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  50 in total

1.  Network synchrony in the nucleus accumbens in vivo.

Authors:  Y Goto; P O'Donnell
Journal:  J Neurosci       Date:  2001-06-15       Impact factor: 6.167

Review 2.  Targeting and readout strategies for fast optical neural control in vitro and in vivo.

Authors:  Viviana Gradinaru; Kimberly R Thompson; Feng Zhang; Murtaza Mogri; Kenneth Kay; M Bret Schneider; Karl Deisseroth
Journal:  J Neurosci       Date:  2007-12-26       Impact factor: 6.167

3.  Molecular determinants differentiating photocurrent properties of two channelrhodopsins from chlamydomonas.

Authors:  Hongxia Wang; Yuka Sugiyama; Takuya Hikima; Eriko Sugano; Hiroshi Tomita; Tetsuo Takahashi; Toru Ishizuka; Hiromu Yawo
Journal:  J Biol Chem       Date:  2008-12-22       Impact factor: 5.157

4.  Red-shifted optogenetic excitation: a tool for fast neural control derived from Volvox carteri.

Authors:  Feng Zhang; Matthias Prigge; Florent Beyrière; Satoshi P Tsunoda; Joanna Mattis; Ofer Yizhar; Peter Hegemann; Karl Deisseroth
Journal:  Nat Neurosci       Date:  2008-04-23       Impact factor: 24.884

5.  High-efficiency channelrhodopsins for fast neuronal stimulation at low light levels.

Authors:  André Berndt; Philipp Schoenenberger; Joanna Mattis; Kay M Tye; Karl Deisseroth; Peter Hegemann; Thomas G Oertner
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-19       Impact factor: 11.205

6.  Synchronous neural afterdischarges in rat hippocampal slices without active chemical synapses.

Authors:  C P Taylor; F E Dudek
Journal:  Science       Date:  1982-11-19       Impact factor: 47.728

7.  Amygdala circuitry mediating reversible and bidirectional control of anxiety.

Authors:  Kay M Tye; Rohit Prakash; Sung-Yon Kim; Lief E Fenno; Logan Grosenick; Hosniya Zarabi; Kimberly R Thompson; Viviana Gradinaru; Charu Ramakrishnan; Karl Deisseroth
Journal:  Nature       Date:  2011-03-09       Impact factor: 49.962

8.  Voltage- and temperature-dependent gating of heterologously expressed channelrhodopsin-2.

Authors:  T E Chater; J M Henley; J T Brown; A D Randall
Journal:  J Neurosci Methods       Date:  2010-08-04       Impact factor: 2.390

9.  Excitatory transmission from the amygdala to nucleus accumbens facilitates reward seeking.

Authors:  Garret D Stuber; Dennis R Sparta; Alice M Stamatakis; Wieke A van Leeuwen; Juanita E Hardjoprajitno; Saemi Cho; Kay M Tye; Kimberly A Kempadoo; Feng Zhang; Karl Deisseroth; Antonello Bonci
Journal:  Nature       Date:  2011-06-29       Impact factor: 49.962

10.  New channelrhodopsin with a red-shifted spectrum and rapid kinetics from Mesostigma viride.

Authors:  Elena G Govorunova; Elena N Spudich; C Elizabeth Lane; Oleg A Sineshchekov; John L Spudich
Journal:  mBio       Date:  2011-06-21       Impact factor: 7.867

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  306 in total

Review 1.  Contemporary approaches to neural circuit manipulation and mapping: focus on reward and addiction.

Authors:  Benjamin T Saunders; Jocelyn M Richard; Patricia H Janak
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-09-19       Impact factor: 6.237

2.  Structural foundations of optogenetics: Determinants of channelrhodopsin ion selectivity.

Authors:  Andre Berndt; Soo Yeun Lee; Jonas Wietek; Charu Ramakrishnan; Elizabeth E Steinberg; Asim J Rashid; Hoseok Kim; Sungmo Park; Adam Santoro; Paul W Frankland; Shrivats M Iyer; Sally Pak; Sofie Ährlund-Richter; Scott L Delp; Robert C Malenka; Sheena A Josselyn; Marie Carlén; Peter Hegemann; Karl Deisseroth
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-22       Impact factor: 11.205

Review 3.  Optogenetics enlightens neuroscience drug discovery.

Authors:  Chenchen Song; Thomas Knöpfel
Journal:  Nat Rev Drug Discov       Date:  2015-11-27       Impact factor: 84.694

Review 4.  Viral vector-based tools advance knowledge of basal ganglia anatomy and physiology.

Authors:  Rachel J Sizemore; Sonja Seeger-Armbruster; Stephanie M Hughes; Louise C Parr-Brownlie
Journal:  J Neurophysiol       Date:  2016-02-17       Impact factor: 2.714

Review 5.  Evolution of optogenetic microdevices.

Authors:  Rajas P Kale; Abbas Z Kouzani; Ken Walder; Michael Berk; Susannah J Tye
Journal:  Neurophotonics       Date:  2015-06-25       Impact factor: 3.593

6.  Modified toolbox for optogenetics in the nonhuman primate.

Authors:  Ji Dai; Ilker Ozden; Daniel I Brooks; Fabien Wagner; Travis May; Naubahar S Agha; Benjamin Brush; David Borton; Arto V Nurmikko; David L Sheinberg
Journal:  Neurophotonics       Date:  2015-05-29       Impact factor: 3.593

7.  Characterization of a highly efficient blue-shifted channelrhodopsin from the marine alga Platymonas subcordiformis.

Authors:  Elena G Govorunova; Oleg A Sineshchekov; Hai Li; Roger Janz; John L Spudich
Journal:  J Biol Chem       Date:  2013-08-30       Impact factor: 5.157

8.  A neural pathway controlling motivation to exert effort.

Authors:  Christophe D Proulx; Sage Aronson; Djordje Milivojevic; Cris Molina; Alan Loi; Bradley Monk; Steven J Shabel; Roberto Malinow
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-11       Impact factor: 11.205

9.  A Basal Ganglia Circuit Sufficient to Guide Birdsong Learning.

Authors:  Lei Xiao; Gaurav Chattree; Francisco Garcia Oscos; Mou Cao; Matthew J Wanat; Todd F Roberts
Journal:  Neuron       Date:  2018-03-15       Impact factor: 17.173

10.  ACC to Dorsal Medial Striatum Inputs Modulate Histaminergic Itch Sensation.

Authors:  Yu-Chen Lu; Yu-Jun Wang; Bin Lu; Ming Chen; Ping Zheng; Jing-Gen Liu
Journal:  J Neurosci       Date:  2018-03-14       Impact factor: 6.167

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