Literature DB >> 22176031

Covalently bound azido groups are very specific water sensors, even in hydrogen-bonding environments.

Marta P Wolfshorndl1, Rachel Baskin, Ishita Dhawan, Casey H Londergan.   

Abstract

Covalently bound azido groups are found in many commercially available biomolecular precursors and substrates, and the NNN asymmetric stretching band of these groups is a strong infrared absorber that appears in a spectral region clear of other signals. In order to evaluate comprehensively the solvatochromism of the asymmetric azido NNN stretching band for site-specific use in biomolecular contexts, infrared spectra of the model compounds 5-azido,1-pentanoic acid and 3-(p-azidophenyl),1-propanoic acid were acquired in a large variety of nonpolar, polar, and hydrogen-bond-donating solvents, as well as mixed aqueous-organic solvents. Spectra in pure solvents indicated that the aliphatic NNN stretching frequency maximum does not depend on solvent polarity, while the aromatic NNN frequency displays a weak but nonzero sensitivity to polarity. In both cases, the NNN frequency exhibits a blue-shift in H-bond-donating solvents, but the frequency in water is higher than in any other H-bond-donating solvent including solvents that are stronger H-bond donors. In nonfluorinated H-bond donor solvents, the frequency blue shift scales with the density of H-bond donors. This sensitivity to the presence of water was further explored in several mixed solvent environments, with the conclusion that this vibrational mode is a highly specific sensor of hydration, even in environments containing other H-bond donors like amides and alcohols, due to the very high local density of H-bond donors in water. The relatively uncomplicated (compared to nitriles, for example), water-specific response of this vibrational mode should lead to its adoption as a site-specific probe of hydration in many different possible systems in which the presence and role of molecular water is of primary interest.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22176031     DOI: 10.1021/jp209899m

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  5 in total

Review 1.  Site-specific infrared probes of proteins.

Authors:  Jianqiang Ma; Ileana M Pazos; Wenkai Zhang; Robert M Culik; Feng Gai
Journal:  Annu Rev Phys Chem       Date:  2015-01-12       Impact factor: 12.703

2.  Sensitive, site-specific, and stable vibrational probe of local protein environments: 4-azidomethyl-L-phenylalanine.

Authors:  Christopher G Bazewicz; Melanie T Liskov; Kevin J Hines; Scott H Brewer
Journal:  J Phys Chem B       Date:  2013-07-18       Impact factor: 2.991

3.  Conformation-specific detection of calmodulin binding using the unnatural amino acid p-azido-phenylalanine (AzF) as an IR-sensor.

Authors:  Anne Creon; Inokentijs Josts; Stephan Niebling; Nils Huse; Henning Tidow
Journal:  Struct Dyn       Date:  2018-11-07       Impact factor: 2.920

4.  Characterization of Acetonitrile Isotopologues as Vibrational Probes of Electrolytes.

Authors:  Bogdan Dereka; Nicholas H C Lewis; Jonathan H Keim; Scott A Snyder; Andrei Tokmakoff
Journal:  J Phys Chem B       Date:  2021-12-28       Impact factor: 2.991

5.  Versatile Vibrational Energy Sensors for Proteins.

Authors:  Jan G Löffler; Erhan Deniz; Carolin Feid; Valentin G Franz; Jens Bredenbeck
Journal:  Angew Chem Int Ed Engl       Date:  2022-04-06       Impact factor: 16.823

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.