Literature DB >> 22174295

Integrating VA's NDF-RT drug terminology with PharmGKB: preliminary results.

Jyotishman Pathak1, Laura C Weiss, Matthew J Durski, Qian Zhu, Robert R Freimuth, Christopher G Chute.   

Abstract

Biomedical terminology and vocabulary standards play an important role in enabling consistent, comparable, and meaningful sharing of data within and across institutional boundaries, as well as ensuring semantic interoperability. The Veterans Affairs (VA) National Drug File Reference Terminology (NDF-RT) is a federally recommended standardized terminology resource encompassing medications, ingredients, and a hierarchy for high-level drug classes. In this study, we investigate the drug-disease relationships in NDF-RT and determine how PharmGKB can be leveraged to augment NDF-RT, and vice-versa. Our preliminary results indicate that with additional curation and analyses, information contained in both knowledge resources can be mutually integrated.

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Year:  2012        PMID: 22174295      PMCID: PMC3909655     

Source DB:  PubMed          Journal:  Pac Symp Biocomput        ISSN: 2335-6928


  9 in total

1.  A semantic normal form for clinical drugs in the UMLS: early experiences with the VANDF.

Authors:  Stuart J Nelson; Steven H Brown; Mark S Erlbaum; Nels Olson; Tammy Powell; Brian Carlsen; John Carter; Mark S Tuttle; William T Hole
Journal:  Proc AMIA Symp       Date:  2002

2.  Analyzing categorical information in two publicly available drug terminologies: RxNorm and NDF-RT.

Authors:  Jyotishman Pathak; Christopher G Chute
Journal:  J Am Med Inform Assoc       Date:  2010 Jul-Aug       Impact factor: 4.497

3.  PharmGKB: a logical home for knowledge relating genotype to drug response phenotype.

Authors:  Russ B Altman
Journal:  Nat Genet       Date:  2007-04       Impact factor: 38.330

4.  Biomedical ontologies in action: role in knowledge management, data integration and decision support.

Authors:  O Bodenreider
Journal:  Yearb Med Inform       Date:  2008

5.  Medication and indication linkage: A practical therapy for the problem list?

Authors:  Matthew M Burton; Linas Simonaitis; Gunther Schadow
Journal:  AMIA Annu Symp Proc       Date:  2008-11-06

6.  Enabling Hierarchical View of RxNorm with NDF-RT Drug Classes.

Authors:  Matvey B Palchuk; Michael Klumpenaar; Tarang Jatkar; Ralph J Zottola; William G Adams; Aaron H Abend
Journal:  AMIA Annu Symp Proc       Date:  2010-11-13

7.  Further revamping VA's NDF-RT drug terminology for clinical research.

Authors:  Jyotishman Pathak; Christopher G Chute
Journal:  J Am Med Inform Assoc       Date:  2011-03-17       Impact factor: 4.497

8.  Exchange of computable patient data between the Department of Veterans Affairs (VA) and the Department of Defense (DoD): terminology mediation strategy.

Authors:  Omar Bouhaddou; Pradnya Warnekar; Fola Parrish; Nhan Do; Jack Mandel; John Kilbourne; Michael J Lincoln
Journal:  J Am Med Inform Assoc       Date:  2007-12-20       Impact factor: 4.497

9.  VA National Drug File Reference Terminology: a cross-institutional content coverage study.

Authors:  Steven H Brown; Peter L Elkin; S Trent Rosenbloom; Casey Husser; Brent A Bauer; Michael J Lincoln; John Carter; Mark Erlbaum; Mark S Tuttle
Journal:  Stud Health Technol Inform       Date:  2004
  9 in total
  3 in total

1.  Disambiguation of PharmGKB drug-disease relations with NDF-RT and SPL.

Authors:  Qian Zhu; Robert R Freimuth; Jyotishman Pathak; Matthew J Durski; Christopher G Chute
Journal:  J Biomed Inform       Date:  2013-05-29       Impact factor: 6.317

2.  Quality assurance of chemical ingredient classification for the National Drug File - Reference Terminology.

Authors:  Ling Zheng; Hasan Yumak; Ling Chen; Christopher Ochs; James Geller; Joan Kapusnik-Uner; Yehoshua Perl
Journal:  J Biomed Inform       Date:  2017-07-16       Impact factor: 6.317

3.  Exploring pharmacoepidemiologic groupings of drugs from a clinical perspective.

Authors:  Rainer Winnenburg; Olivier Bodenreider
Journal:  Stud Health Technol Inform       Date:  2013
  3 in total

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