Literature DB >> 22172994

Mitochondrial poly(A) polymerase and polyadenylation.

Jeong Ho Chang1, Liang Tong.   

Abstract

Polyadenylation of mitochondrial RNAs in higher eukaryotic organisms have diverse effects on their function and metabolism. Polyadenylation completes the UAA stop codon of a majority of mitochondrial mRNAs in mammals, regulates the translation of the mRNAs, and has diverse effects on their stability. In contrast, polyadenylation of most mitochondrial mRNAs in plants leads to their degradation, consistent with the bacterial origin of this organelle. PAPD1 (mtPAP, TUTase1), a noncanonical poly(A) polymerase (ncPAP), is responsible for producing the poly(A) tails in mammalian mitochondria. The crystal structure of human PAPD1 was reported recently, offering molecular insights into its catalysis. This article is part of a Special Issue entitled: Mitochondrial Gene Expression.
Copyright © 2011 Elsevier B.V. All rights reserved.

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Year:  2011        PMID: 22172994      PMCID: PMC3307840          DOI: 10.1016/j.bbagrm.2011.10.012

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  69 in total

Review 1.  Polyadenylation and beyond: emerging roles for noncanonical poly(A) polymerases.

Authors:  Marie-Joëlle Schmidt; Chris J Norbury
Journal:  Wiley Interdiscip Rev RNA       Date:  2010-05-06       Impact factor: 9.957

2.  UTP-bound and Apo structures of a minimal RNA uridylyltransferase.

Authors:  Jason Stagno; Inna Aphasizheva; Anja Rosengarth; Hartmut Luecke; Ruslan Aphasizhev
Journal:  J Mol Biol       Date:  2006-12-02       Impact factor: 5.469

3.  Mammalian polynucleotide phosphorylase is an intermembrane space RNase that maintains mitochondrial homeostasis.

Authors:  Hsiao-Wen Chen; Robert N Rainey; Cynthia E Balatoni; David W Dawson; Joshua J Troke; Sylwia Wasiak; Jason S Hong; Heidi M McBride; Carla M Koehler; Michael A Teitell; Samuel W French
Journal:  Mol Cell Biol       Date:  2006-09-11       Impact factor: 4.272

4.  The human mitochondrial transcriptome.

Authors:  Tim R Mercer; Shane Neph; Marcel E Dinger; Joanna Crawford; Martin A Smith; Anne-Marie J Shearwood; Eric Haugen; Cameron P Bracken; Oliver Rackham; John A Stamatoyannopoulos; Aleksandra Filipovska; John S Mattick
Journal:  Cell       Date:  2011-08-19       Impact factor: 41.582

Review 5.  Cytoplasmic polyadenylation and translational control.

Authors:  Ana Villalba; Olga Coll; Fátima Gebauer
Journal:  Curr Opin Genet Dev       Date:  2011-04-30       Impact factor: 5.578

6.  Structural basis for dimerization and activity of human PAPD1, a noncanonical poly(A) polymerase.

Authors:  Yun Bai; Sandeep K Srivastava; Jeong Ho Chang; James L Manley; Liang Tong
Journal:  Mol Cell       Date:  2011-02-04       Impact factor: 17.970

Review 7.  Mitochondrial RNA processing in trypanosomes.

Authors:  Ruslan Aphasizhev; Inna Aphasizheva
Journal:  Res Microbiol       Date:  2011-05-01       Impact factor: 3.992

8.  Pentatricopeptide repeat proteins stimulate mRNA adenylation/uridylation to activate mitochondrial translation in trypanosomes.

Authors:  Inna Aphasizheva; Dmitri Maslov; Xiaorong Wang; Lan Huang; Ruslan Aphasizhev
Journal:  Mol Cell       Date:  2011-04-08       Impact factor: 17.970

9.  PDE12 removes mitochondrial RNA poly(A) tails and controls translation in human mitochondria.

Authors:  Joanna Rorbach; Thomas J J Nicholls; Michal Minczuk
Journal:  Nucleic Acids Res       Date:  2011-06-11       Impact factor: 16.971

Review 10.  The Cid1 family of non-canonical poly(A) polymerases.

Authors:  Abigail L Stevenson; Chris J Norbury
Journal:  Yeast       Date:  2006-10-15       Impact factor: 3.239

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  40 in total

Review 1.  Constructive edge of uridylation-induced RNA degradation.

Authors:  Ruslan Aphasizhev; Takuma Suematsu; Liye Zhang; Inna Aphasizheva
Journal:  RNA Biol       Date:  2016-10-07       Impact factor: 4.652

Review 2.  The application of RNA-seq to the comprehensive analysis of plant mitochondrial transcriptomes.

Authors:  James D Stone; Helena Storchova
Journal:  Mol Genet Genomics       Date:  2014-09-03       Impact factor: 3.291

3.  Exploration of CCA-added RNAs revealed the expression of mitochondrial non-coding RNAs regulated by CCA-adding enzyme.

Authors:  Kamlesh Pawar; Megumi Shigematsu; Phillipe Loher; Shozo Honda; Isidore Rigoutsos; Yohei Kirino
Journal:  RNA Biol       Date:  2019-09-12       Impact factor: 4.652

4.  Population-level expression variability of mitochondrial DNA-encoded genes in humans.

Authors:  Gang Wang; Ence Yang; Ishita Mandhan; Candice L Brinkmeyer-Langford; James J Cai
Journal:  Eur J Hum Genet       Date:  2014-01-08       Impact factor: 4.246

5.  In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings.

Authors:  Marlene Reichel; Yalin Liao; Mandy Rettel; Chikako Ragan; Maurits Evers; Anne-Marie Alleaume; Rastislav Horos; Matthias W Hentze; Thomas Preiss; Anthony A Millar
Journal:  Plant Cell       Date:  2016-10-11       Impact factor: 11.277

6.  NDP52 interacts with mitochondrial RNA poly(A) polymerase to promote mitophagy.

Authors:  Norihiko Furuya; Soichiro Kakuta; Katsuhiko Sumiyoshi; Maya Ando; Risa Nonaka; Ayami Suzuki; Saiko Kazuno; Shinji Saiki; Nobutaka Hattori
Journal:  EMBO Rep       Date:  2018-10-11       Impact factor: 8.807

Review 7.  Mitochondrial transcription in mammalian cells.

Authors:  Inna N Shokolenko; Mikhail F Alexeyev
Journal:  Front Biosci (Landmark Ed)       Date:  2017-01-01

8.  Extensive alternative polyadenylation during zebrafish development.

Authors:  Igor Ulitsky; Alena Shkumatava; Calvin H Jan; Alexander O Subtelny; David Koppstein; George W Bell; Hazel Sive; David P Bartel
Journal:  Genome Res       Date:  2012-06-21       Impact factor: 9.043

Review 9.  Cytoplasmic RNA: a case of the tail wagging the dog.

Authors:  Chris J Norbury
Journal:  Nat Rev Mol Cell Biol       Date:  2013-08-29       Impact factor: 94.444

Review 10.  Role of microRNA in metabolic shift during heart failure.

Authors:  Mark V Pinti; Quincy A Hathaway; John M Hollander
Journal:  Am J Physiol Heart Circ Physiol       Date:  2016-10-14       Impact factor: 4.733

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