Literature DB >> 22172738

Gating and regulation of the cytochrome c oxidase proton pump.

Shelagh Ferguson-Miller1, Carrie Hiser, Jian Liu.   

Abstract

As a consumer of 95% of the oxygen we breathe, cytochrome c oxidase plays a major role in the energy balance of the cell. Regulation of its oxygen reduction and proton pumping activity is therefore critical to physiological function in health and disease. The location and structure of pathways for protons that are required to support cytochrome c oxidase activity are still under debate, with respect to their requirements for key residues and fixed waters, and how they are gated to prevent (or allow) proton backflow. Recent high resolution structures of bacterial and mammalian forms reveal conserved lipid and steroid binding sites as well as redox-linked conformational changes that provide new insights into potential regulatory ligands and gating modes. Mechanistic interpretation of these findings and their significance for understanding energy regulation is discussed. Copyright Â
© 2011 Elsevier B.V. All rights reserved.

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Year:  2011        PMID: 22172738      PMCID: PMC3302176          DOI: 10.1016/j.bbabio.2011.11.018

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  46 in total

1.  The X-ray crystal structures of wild-type and EQ(I-286) mutant cytochrome c oxidases from Rhodobacter sphaeroides.

Authors:  Margareta Svensson-Ek; Jeff Abramson; Gisela Larsson; Susanna Törnroth; Peter Brzezinski; So Iwata
Journal:  J Mol Biol       Date:  2002-08-09       Impact factor: 5.469

2.  Crystallographic and online spectral evidence for role of conformational change and conserved water in cytochrome oxidase proton pump.

Authors:  Jian Liu; Ling Qin; Shelagh Ferguson-Miller
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-04       Impact factor: 11.205

Review 3.  Proton-pumping cytochrome c oxidase.

Authors:  M Wikström; K Krab
Journal:  Biochim Biophys Acta       Date:  1979-08-17

4.  A role for the protein in internal electron transfer to the catalytic center of cytochrome c oxidase.

Authors:  Marian Antalik; Daniel Jancura; Graham Palmer; Marian Fabian
Journal:  Biochemistry       Date:  2005-11-15       Impact factor: 3.162

5.  The functional and physical form of mammalian cytochrome c oxidase determined by gel filtration, radiation inactivation, and sedimentation equilibrium analysis.

Authors:  M D Suarez; A Revzin; R Narlock; E S Kempner; D A Thompson; S Ferguson-Miller
Journal:  J Biol Chem       Date:  1984-11-25       Impact factor: 5.157

6.  Molecular dynamics simulation of water in cytochrome c oxidase reveals two water exit pathways and the mechanism of transport.

Authors:  Ryogo Sugitani; Alexei A Stuchebrukhov
Journal:  Biochim Biophys Acta       Date:  2009-04-21

7.  High resolution crystal structure of Paracoccus denitrificans cytochrome c oxidase: new insights into the active site and the proton transfer pathways.

Authors:  Juergen Koepke; Elena Olkhova; Heike Angerer; Hannelore Müller; Guohong Peng; Hartmut Michel
Journal:  Biochim Biophys Acta       Date:  2009-04-15

8.  Bilirubin selectively inhibits cytochrome c oxidase activity and induces apoptosis in immature cortical neurons: assessment of the protective effects of glycoursodeoxycholic acid.

Authors:  Ana Rita Vaz; Maria Delgado-Esteban; Maria Alexandra Brito; Juan P Bolaños; Dora Brites; Angeles Almeida
Journal:  J Neurochem       Date:  2009-10-10       Impact factor: 5.372

9.  The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 A.

Authors:  T Tsukihara; H Aoyama; E Yamashita; T Tomizaki; H Yamaguchi; K Shinzawa-Itoh; R Nakashima; R Yaono; S Yoshikawa
Journal:  Science       Date:  1996-05-24       Impact factor: 47.728

10.  Microscopic pKa analysis of Glu286 in cytochrome c oxidase (Rhodobacter sphaeroides): toward a calibrated molecular model.

Authors:  Nilanjan Ghosh; Xavier Prat-Resina; M R Gunner; Qiang Cui
Journal:  Biochemistry       Date:  2009-03-24       Impact factor: 3.162

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  36 in total

1.  Regulatory role of the respiratory supercomplex factors in Saccharomyces cerevisiae.

Authors:  Camilla Rydström Lundin; Christoph von Ballmoos; Martin Ott; Pia Ädelroth; Peter Brzezinski
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-18       Impact factor: 11.205

2.  Mitochondrial OXPHOS genes provides insights into genetics basis of hypoxia adaptation in anchialine cave shrimps.

Authors:  Huayun Guo; Hao Yang; Yitao Tao; Dan Tang; Qiong Wu; Zhengfei Wang; Boping Tang
Journal:  Genes Genomics       Date:  2018-03-06       Impact factor: 1.839

Review 3.  Molecular mechanisms for generating transmembrane proton gradients.

Authors:  M R Gunner; Muhamed Amin; Xuyu Zhu; Jianxun Lu
Journal:  Biochim Biophys Acta       Date:  2013-03-16

Review 4.  Copper active sites in biology.

Authors:  Edward I Solomon; David E Heppner; Esther M Johnston; Jake W Ginsbach; Jordi Cirera; Munzarin Qayyum; Matthew T Kieber-Emmons; Christian H Kjaergaard; Ryan G Hadt; Li Tian
Journal:  Chem Rev       Date:  2014-03-03       Impact factor: 60.622

Review 5.  Role of conformational change and K-path ligands in controlling cytochrome c oxidase activity.

Authors:  Jian Liu; Carrie Hiser; Shelagh Ferguson-Miller
Journal:  Biochem Soc Trans       Date:  2017-08-24       Impact factor: 5.407

6.  Time-resolved surface-enhanced IR-absorption spectroscopy of direct electron transfer to cytochrome c oxidase from R. sphaeroides.

Authors:  Andreas Schwaighofer; Christoph Steininger; David M Hildenbrandt; Johannes Srajer; Christoph Nowak; Wolfgang Knoll; Renate L C Naumann
Journal:  Biophys J       Date:  2013-12-17       Impact factor: 4.033

Review 7.  OXPHOS mutations and neurodegeneration.

Authors:  Werner J H Koopman; Felix Distelmaier; Jan A M Smeitink; Peter H G M Willems
Journal:  EMBO J       Date:  2012-11-13       Impact factor: 11.598

8.  Computational prediction and in vitro analysis of potential physiological ligands of the bile acid binding site in cytochrome c oxidase.

Authors:  Leann Buhrow; Carrie Hiser; Jeffrey R Van Voorst; Shelagh Ferguson-Miller; Leslie A Kuhn
Journal:  Biochemistry       Date:  2013-09-27       Impact factor: 3.162

9.  Changing hydration level in an internal cavity modulates the proton affinity of a key glutamate in cytochrome c oxidase.

Authors:  Puja Goyal; Jianxun Lu; Shuo Yang; M R Gunner; Qiang Cui
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-06       Impact factor: 11.205

10.  A conserved amphipathic ligand binding region influences k-path-dependent activity of cytochrome C oxidase.

Authors:  Carrie Hiser; Leann Buhrow; Jian Liu; Leslie Kuhn; Shelagh Ferguson-Miller
Journal:  Biochemistry       Date:  2013-02-12       Impact factor: 3.162

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