Literature DB >> 22161351

Multiscale mechanistic modeling in pharmaceutical research and development.

Lars Kuepfer1, Jörg Lippert, Thomas Eissing.   

Abstract

Discontinuation of drug development projects due to lack of efficacy or adverse events is one of the main cost drivers in pharmaceutical research and development (R&D). Investments have to be written-off and contribute to the total costs of a successful drug candidate receiving marketing authorization and allowing return on invest. A vital risk for pharmaceutical innovator companies is late stage clinical failure since costs for individual clinical trials may exceed the one billion Euro threshold. To guide investment decisions and to safeguard maximum medical benefit and safety for patients recruited in clinical trials, it is therefore essential to understand the clinical consequences of all information and data generated. The complexity of the physiological and pathophysiological processes and the sheer amount of information available overcharge the mental capacity of any human being and prevent a prediction of the success in clinical development. A rigorous integration of knowledge, assumption, and experimental data into computational models promises a significant improvement of the rationalization of decision making in pharmaceutical industry. We here give an overview of the current status of modeling and simulation in pharmaceutical R&D and outline the perspectives of more recent developments in mechanistic modeling. Specific modeling approaches for different biological scales ranging from intracellular processes to whole organism physiology are introduced and an example for integrative multiscale modeling of therapeutic efficiency in clinical oncology trials is showcased.

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Year:  2012        PMID: 22161351     DOI: 10.1007/978-1-4419-7210-1_32

Source DB:  PubMed          Journal:  Adv Exp Med Biol        ISSN: 0065-2598            Impact factor:   2.622


  11 in total

1.  Identification of alterations in the Jacobian of biochemical reaction networks from steady state covariance data at two conditions.

Authors:  Philipp Kügler; Wei Yang
Journal:  J Math Biol       Date:  2013-05-26       Impact factor: 2.259

2.  Differentiation between genomic and non-genomic feedback controls yields an HPA axis model featuring hypercortisolism as an irreversible bistable switch.

Authors:  Clemens A Zarzer; Martin G Puchinger; Gottfried Köhler; Philipp Kügler
Journal:  Theor Biol Med Model       Date:  2013-11-09       Impact factor: 2.432

3.  Using Bayesian-PBPK modeling for assessment of inter-individual variability and subgroup stratification.

Authors:  Markus Krauss; Rolf Burghaus; Jörg Lippert; Mikko Niemi; Pertti Neuvonen; Andreas Schuppert; Stefan Willmann; Lars Kuepfer; Linus Görlitz
Journal:  In Silico Pharmacol       Date:  2013-04-11

4.  Virtual Systems Pharmacology (ViSP) software for simulation from mechanistic systems-level models.

Authors:  Sergey Ermakov; Peter Forster; Jyotsna Pagidala; Marko Miladinov; Albert Wang; Rebecca Baillie; Derek Bartlett; Mike Reed; Tarek A Leil
Journal:  Front Pharmacol       Date:  2014-10-22       Impact factor: 5.810

5.  Noninvasive Assessment of Elimination and Retention using CT-FMT and Kinetic Whole-body Modeling.

Authors:  Wa'el Al Rawashdeh; Simin Zuo; Andrea Melle; Lia Appold; Susanne Koletnik; Yoanna Tsvetkova; Nataliia Beztsinna; Andrij Pich; Twan Lammers; Fabian Kiessling; Felix Gremse
Journal:  Theranostics       Date:  2017-04-05       Impact factor: 11.556

Review 6.  Role of Knowledge Management in Development and Lifecycle Management of Biopharmaceuticals.

Authors:  Anurag S Rathore; Oscar Fabián Garcia-Aponte; Aydin Golabgir; Bibiana Margarita Vallejo-Diaz; Christoph Herwig
Journal:  Pharm Res       Date:  2016-10-26       Impact factor: 4.200

7.  Integrating cellular metabolism into a multiscale whole-body model.

Authors:  Markus Krauss; Stephan Schaller; Steffen Borchers; Rolf Findeisen; Jörg Lippert; Lars Kuepfer
Journal:  PLoS Comput Biol       Date:  2012-10-25       Impact factor: 4.475

8.  A multi-scale modeling framework for individualized, spatiotemporal prediction of drug effects and toxicological risk.

Authors:  Juan G Diaz Ochoa; Joachim Bucher; Alexandre R R Péry; José M Zaldivar Comenges; Jens Niklas; Klaus Mauch
Journal:  Front Pharmacol       Date:  2013-01-22       Impact factor: 5.810

Review 9.  Agent-based modeling: a systematic assessment of use cases and requirements for enhancing pharmaceutical research and development productivity.

Authors:  C Anthony Hunt; Ryan C Kennedy; Sean H J Kim; Glen E P Ropella
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2013-06-04

Review 10.  Computational Modeling in Liver Surgery.

Authors:  Bruno Christ; Uta Dahmen; Karl-Heinz Herrmann; Matthias König; Jürgen R Reichenbach; Tim Ricken; Jana Schleicher; Lars Ole Schwen; Sebastian Vlaic; Navina Waschinsky
Journal:  Front Physiol       Date:  2017-11-14       Impact factor: 4.566

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