Literature DB >> 22160795

SWIFT MODELLER v2.0: a platform-independent GUI for homology modeling.

Abhinav Mathur1, Ambarish S Vidyarthi.   

Abstract

SWIFT MODELLER v2.0 is a platform-independent Java-based graphical user interface to MODELLER. It provides an interactive homology modeling solution by automating the formatting, scripting, and data extraction processes, meaning that the user only needs to paste in the protein target sequence as input. SWIFT MODELLER v2.0 takes a step-by-step approach where the flow of the software screens depicts steps in the homology modeling protocol. Ramachandran plots and DOPE profile graphs are sketched and displayed for in-depth model analysis, along with an embedded Jmol viewer for 3D visualization of the constructed model. SWIFT MODELLER v2.0 is functional on all Linux-based and Microsoft Windows operating systems for which MODELLER has been developed. The software is available as freeware at http://www.bitmesra.ac.in/swift-modeller/swift.htm .

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Substances：

Year:  2011        PMID： 22160795     DOI： 10.1007/s00894-011-1319-6

Source DB:  PubMed          Journal:  J Mol Model        ISSN： 0948-5023            Impact factor:   1.810


  6 in total

1.  Modeling of loops in protein structures.

Authors:  A Fiser; R K Do; A Sali
Journal:  Protein Sci       Date:  2000-09       Impact factor: 6.725

2.  Biomolecules in the computer: Jmol to the rescue.

Authors:  Angel Herráez
Journal:  Biochem Mol Biol Educ       Date:  2006-07       Impact factor: 1.160

3.  SWIFT MODELLER: a Java based GUI for molecular modeling.

Authors:  Abhinav Mathur; Ambarish S Vidyarthi
Journal:  J Mol Model       Date:  2011-01-22       Impact factor: 1.810

4.  Comparative protein modelling by satisfaction of spatial restraints.

Authors:  A Sali; T L Blundell
Journal:  J Mol Biol       Date:  1993-12-05       Impact factor: 5.469

5.  EasyModeller: A graphical interface to MODELLER.

Authors:  Bhusan K Kuntal; Polamarasetty Aparoy; Pallu Reddanna
Journal:  BMC Res Notes       Date:  2010-08-16

6.  BioJava: an open-source framework for bioinformatics.

Authors:  R C G Holland; T A Down; M Pocock; A Prlić; D Huen; K James; S Foisy; A Dräger; A Yates; M Heuer; M J Schreiber
Journal:  Bioinformatics       Date:  2008-08-08       Impact factor: 6.937
  6 in total
  3 in total

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Authors:  Yaqun Zou; Daniela Zwolanek; Yayoi Izu; Shreya Gandhy; Gudrun Schreiber; Knut Brockmann; Marcella Devoto; Zuozhen Tian; Ying Hu; Guido Veit; Markus Meier; Jörg Stetefeld; Debbie Hicks; Volker Straub; Nicol C Voermans; David E Birk; Elisabeth R Barton; Manuel Koch; Carsten G Bönnemann
Journal:  Hum Mol Genet       Date:  2013-12-11       Impact factor: 6.150

2.  SynSysNet: integration of experimental data on synaptic protein-protein interactions with drug-target relations.

Authors:  Joachim von Eichborn; Mathias Dunkel; Björn O Gohlke; Sarah C Preissner; Michael F Hoffmann; Jakob M J Bauer; J D Armstrong; Martin H Schaefer; Miguel A Andrade-Navarro; Nicolas Le Novere; Michael D R Croning; Seth G N Grant; Pim van Nierop; August B Smit; Robert Preissner
Journal:  Nucleic Acids Res       Date:  2012-11-11       Impact factor: 16.971

3.  Modelface: an Application Programming Interface (API) for Homology Modeling Studies Using Modeller Software.

Authors:  Amirhossein Sakhteman; Bijan Zare
Journal:  Iran J Pharm Res       Date:  2016       Impact factor: 1.696
  3 in total

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