Literature DB >> 22156846

An open-ended plea for the development of a global database of HIV vaccine responses.

Peter Wilkinson1, Abdelali Filali-Mouhim, Shuzhao Li, Jeffrey Ahlers, John Schatzle, Bali Pulendran, Rafick-Pierre Sekaly, Mark J Cameron.   

Abstract

PURPOSE OF REVIEW: The purpose of this review is to describe a critical need of the HIV research community for a globally accessible database of HIV vaccine responses that stores data from multiple assay platforms in the form of lists of correlates of immune protection and vaccine efficacy. This is not a detailed review but a first step toward developing a dialogue among investigators and funding organizations to build upon existing resources to efficiently develop a HIV vaccine response and correlates database. We also discuss examples of databases that complement our needs and could be integrated into our proposed database requirements. RECENT
FINDINGS: Several vaccine-related databases that store information at the study level currently exist, however, at the present time, a correlates of immune protection database does not exist.
SUMMARY: Here, we discuss the scientific climate surrounding HIV vaccine development with the evolution of systems biology approaches, the problems at hand for analyzing and harmonizing datasets generated from preclinical and clinical studies, and the curation and accessibility of useful information to model outcomes. We also compare key database requirements of a few existing globally accessible databases and provide several illustrative correlate database submission and utilization examples.

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Year:  2012        PMID: 22156846      PMCID: PMC3253342          DOI: 10.1097/COH.0b013e32834e390a

Source DB:  PubMed          Journal:  Curr Opin HIV AIDS        ISSN: 1746-630X            Impact factor:   4.283


  17 in total

Review 1.  New approaches to design HIV-1 T-cell vaccines.

Authors:  Hélène Perrin; Glenda Canderan; Rafick-Pierre Sékaly; Lydie Trautmann
Journal:  Curr Opin HIV AIDS       Date:  2010-09       Impact factor: 4.283

Review 2.  HIV vaccines: lessons learned and the way forward.

Authors:  Jerome H Kim; Supachai Rerks-Ngarm; Jean-Louis Excler; Nelson L Michael
Journal:  Curr Opin HIV AIDS       Date:  2010-09       Impact factor: 4.283

3.  The Immunological Genome Project: networks of gene expression in immune cells.

Authors:  Tracy S P Heng; Michio W Painter
Journal:  Nat Immunol       Date:  2008-10       Impact factor: 25.606

Review 4.  25 years after HIV discovery: prospects for cure and vaccine.

Authors:  Luc Montagnier
Journal:  Virology       Date:  2010-02-20       Impact factor: 3.616

5.  The changing pattern of AIDS-defining illnesses with the introduction of highly active antiretroviral therapy (HAART)in a London clinic.

Authors:  N J Ives; B G Gazzard; P J Easterbrook
Journal:  J Infect       Date:  2001-02       Impact factor: 6.072

6.  Oncomine 3.0: genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles.

Authors:  Daniel R Rhodes; Shanker Kalyana-Sundaram; Vasudeva Mahavisno; Radhika Varambally; Jianjun Yu; Benjamin B Briggs; Terrence R Barrette; Matthew J Anstet; Colleen Kincead-Beal; Prakash Kulkarni; Sooryanaryana Varambally; Debashis Ghosh; Arul M Chinnaiyan
Journal:  Neoplasia       Date:  2007-02       Impact factor: 5.715

7.  Patterns of the hazard of death after AIDS through the evolution of antiretroviral therapy: 1984-2004.

Authors:  Michael F Schneider; Stephen J Gange; Carolyn M Williams; Kathryn Anastos; Ruth M Greenblatt; Lawrence Kingsley; Roger Detels; Alvaro Muñoz
Journal:  AIDS       Date:  2005-11-18       Impact factor: 4.177

8.  BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models.

Authors:  Chen Li; Marco Donizelli; Nicolas Rodriguez; Harish Dharuri; Lukas Endler; Vijayalakshmi Chelliah; Lu Li; Enuo He; Arnaud Henry; Melanie I Stefan; Jacky L Snoep; Michael Hucka; Nicolas Le Novère; Camille Laibe
Journal:  BMC Syst Biol       Date:  2010-06-29

9.  Database resources of the National Center for Biotechnology Information.

Authors:  Eric W Sayers; Tanya Barrett; Dennis A Benson; Evan Bolton; Stephen H Bryant; Kathi Canese; Vyacheslav Chetvernin; Deanna M Church; Michael DiCuccio; Scott Federhen; Michael Feolo; Ian M Fingerman; Lewis Y Geer; Wolfgang Helmberg; Yuri Kapustin; David Landsman; David J Lipman; Zhiyong Lu; Thomas L Madden; Tom Madej; Donna R Maglott; Aron Marchler-Bauer; Vadim Miller; Ilene Mizrachi; James Ostell; Anna Panchenko; Lon Phan; Kim D Pruitt; Gregory D Schuler; Edwin Sequeira; Stephen T Sherry; Martin Shumway; Karl Sirotkin; Douglas Slotta; Alexandre Souvorov; Grigory Starchenko; Tatiana A Tatusova; Lukas Wagner; Yanli Wang; W John Wilbur; Eugene Yaschenko; Jian Ye
Journal:  Nucleic Acids Res       Date:  2010-11-21       Impact factor: 16.971

10.  VIOLIN: vaccine investigation and online information network.

Authors:  Zuoshuang Xiang; Thomas Todd; Kim P Ku; Bethany L Kovacic; Charles B Larson; Fang Chen; Andrew P Hodges; Yuying Tian; Elizabeth A Olenzek; Boyang Zhao; Lesley A Colby; Howard G Rush; Janet R Gilsdorf; George W Jourdian; Yongqun He
Journal:  Nucleic Acids Res       Date:  2007-11-19       Impact factor: 16.971

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  1 in total

1.  Double-negative T resident memory cells of the lung react to influenza virus infection via CD11c(hi) dendritic cells.

Authors:  K Neyt; C H GeurtsvanKessel; B N Lambrecht
Journal:  Mucosal Immunol       Date:  2015-09-16       Impact factor: 7.313

  1 in total

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