Literature DB >> 22156397

Draft genome sequence of Novosphingobium nitrogenifigens Y88(T).

Timothy J Strabala1, Lucy Macdonald, Vincent Liu, Anne-Marie Smit.   

Abstract

Novosphingobium nitrogenifigens was originally isolated from pulp and paper mill wastewater, a low-nitrogen, high-carbon environment. N. nitrogenifigens is the first known nitrogen-fixing, polyhydroxyalkanoate-accumulating sphingomonad, and we report the annotated draft genome sequence of the type strain Y88(T) here.

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Year:  2012        PMID： 22156397      PMCID： PMC3256603          DOI： 10.1128/JB.06381-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  9 in total

1.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

2.  Metabolism of dibenzo-p-dioxin by Sphingomonas sp. strain RW1.

Authors:  R M Wittich; H Wilkes; V Sinnwell; W Francke; P Fortnagel
Journal:  Appl Environ Microbiol       Date:  1992-03       Impact factor: 4.792

3.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

Review 4.  Occurrence, metabolism, metabolic role, and industrial uses of bacterial polyhydroxyalkanoates.

Authors:  A J Anderson; E A Dawes
Journal:  Microbiol Rev       Date:  1990-12

5.  Sphingopyxis chilensis sp. nov., a chlorophenol-degrading bacterium that accumulates polyhydroxyalkanoate, and transfer of Sphingomonas alaskensis to Sphingopyxis alaskensis comb. nov.

Authors:  F Godoy; M Vancanneyt; M Martínez; A Steinbüchel; J Swings; B H A Rehm
Journal:  Int J Syst Evol Microbiol       Date:  2003-03       Impact factor: 2.747

6.  Sphingobium scionense sp. nov., an aromatic hydrocarbon-degrading bacterium isolated from contaminated sawmill soil.

Authors:  Quanfeng Liang; Gareth Lloyd-Jones
Journal:  Int J Syst Evol Microbiol       Date:  2009-08-03       Impact factor: 2.747

7.  Novosphingobium nitrogenifigens sp. nov., a polyhydroxyalkanoate-accumulating diazotroph isolated from a New Zealand pulp and paper wastewater.

Authors:  Sarah L Addison; Sonia M Foote; Nicola M Reid; Gareth Lloyd-Jones
Journal:  Int J Syst Evol Microbiol       Date:  2007-11       Impact factor: 2.747

8.  Physico-chemical properties of polyhydroxyalkanoate produced by mixed-culture nitrogen-fixing bacteria.

Authors:  Meeta Patel; Daniel J Gapes; Roger H Newman; Peter H Dare
Journal:  Appl Microbiol Biotechnol       Date:  2009-01-06       Impact factor: 4.813

9.  Novosphingobium hassiacum sp. nov., a new species isolated from an aerated sewage pond.

Authors:  Peter Kämpfer; Reinhard Witzenberger; Ewald B M Denner; Hans-Jürgen Busse; Alexander Neef
Journal:  Syst Appl Microbiol       Date:  2002-04       Impact factor: 4.022
  9 in total
  4 in total

1.  Proteomic phenotyping of Novosphingobium nitrogenifigens reveals a robust capacity for simultaneous nitrogen fixation, polyhydroxyalkanoate production, and resistance to reactive oxygen species.

Authors:  Anne-Marie Smit; Timothy J Strabala; Lifeng Peng; Pisana Rawson; Gareth Lloyd-Jones; T William Jordan
Journal:  Appl Environ Microbiol       Date:  2012-05-11       Impact factor: 4.792

2.  Polyhydroxyalkanoate Production by Caenibius tardaugens from Steroidal Endocrine Disruptors.

Authors:  Juan Ibero; Virginia Rivero-Buceta; José Luis García; Beatriz Galán
Journal:  Microorganisms       Date:  2022-03-24

3.  Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities.

Authors:  Frank O Aylward; Bradon R McDonald; Sandra M Adams; Alejandra Valenzuela; Rebeccah A Schmidt; Lynne A Goodwin; Tanja Woyke; Cameron R Currie; Garret Suen; Michael Poulsen
Journal:  Appl Environ Microbiol       Date:  2013-04-05       Impact factor: 4.792

4.  Comparative genomic analysis of six bacteria belonging to the genus Novosphingobium: insights into marine adaptation, cell-cell signaling and bioremediation.

Authors:  Han Ming Gan; André O Hudson; Ahmad Yamin Abdul Rahman; Kok Gan Chan; Michael A Savka
Journal:  BMC Genomics       Date:  2013-06-28       Impact factor: 3.969
  4 in total

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