Literature DB >> 22154892

Combining cellular automata and Lattice Boltzmann method to model multiscale avascular tumor growth coupled with nutrient diffusion and immune competition.

Davide Alemani1, Francesco Pappalardo, Marzio Pennisi, Santo Motta, Vladimir Brusic.   

Abstract

In the last decades the Lattice Boltzmann method (LB) has been successfully used to simulate a variety of processes. The LB model describes the microscopic processes occurring at the cellular level and the macroscopic processes occurring at the continuum level with a unique function, the probability distribution function. Recently, it has been tried to couple deterministic approaches with probabilistic cellular automata (probabilistic CA) methods with the aim to model temporal evolution of tumor growths and three dimensional spatial evolution, obtaining hybrid methodologies. Despite the good results attained by CA-PDE methods, there is one important issue which has not been completely solved: the intrinsic stochastic nature of the interactions at the interface between cellular (microscopic) and continuum (macroscopic) level. CA methods are able to cope with the stochastic phenomena because of their probabilistic nature, while PDE methods are fully deterministic. Even if the coupling is mathematically correct, there could be important statistical effects that could be missed by the PDE approach. For such a reason, to be able to develop and manage a model that takes into account all these three level of complexity (cellular, molecular and continuum), we believe that PDE should be replaced with a statistic and stochastic model based on the numerical discretization of the Boltzmann equation: The Lattice Boltzmann (LB) method. In this work we introduce a new hybrid method to simulate tumor growth and immune system, by applying Cellular Automata Lattice Boltzmann (CA-LB) approach.
Copyright © 2011 Elsevier B.V. All rights reserved.

Entities:  

Mesh:

Year:  2011        PMID: 22154892     DOI: 10.1016/j.jim.2011.11.009

Source DB:  PubMed          Journal:  J Immunol Methods        ISSN: 0022-1759            Impact factor:   2.303


  12 in total

1.  Optimal vaccination schedule search using genetic algorithm over MPI technology.

Authors:  Cristiano Calonaci; Ferdinando Chiacchio; Francesco Pappalardo
Journal:  BMC Med Inform Decis Mak       Date:  2012-11-13       Impact factor: 2.796

2.  Agent based modeling of Treg-Teff cross regulation in relapsing-remitting multiple sclerosis.

Authors:  Marzio Pennisi; Abdul-Mateen Rajput; Luca Toldo; Francesco Pappalardo
Journal:  BMC Bioinformatics       Date:  2013-10-22       Impact factor: 3.169

3.  Agent-based modeling of the immune system: NetLogo, a promising framework.

Authors:  Ferdinando Chiacchio; Marzio Pennisi; Giulia Russo; Santo Motta; Francesco Pappalardo
Journal:  Biomed Res Int       Date:  2014-04-22       Impact factor: 3.411

4.  Computational and bioinformatics techniques for immunology.

Authors:  Francesco Pappalardo; Vladimir Brusic; Filippo Castiglione; Christian Schönbach
Journal:  Biomed Res Int       Date:  2014-12-31       Impact factor: 3.411

5.  Hybrid multiscale modeling and prediction of cancer cell behavior.

Authors:  Mohammad Hossein Zangooei; Jafar Habibi
Journal:  PLoS One       Date:  2017-08-28       Impact factor: 3.240

Review 6.  Cancer vaccines: state of the art of the computational modeling approaches.

Authors:  Francesco Pappalardo; Ferdinando Chiacchio; Santo Motta
Journal:  Biomed Res Int       Date:  2012-12-23       Impact factor: 3.411

7.  Modeling innate immune response to early Mycobacterium infection.

Authors:  Rafael V Carvalho; Jetty Kleijn; Annemarie H Meijer; Fons J Verbeek
Journal:  Comput Math Methods Med       Date:  2012-12-09       Impact factor: 2.238

8.  A Lattice-Boltzmann scheme for the simulation of diffusion in intracellular crowded systems.

Authors:  Liliana Angeles-Martinez; Constantinos Theodoropoulos
Journal:  BMC Bioinformatics       Date:  2015-11-03       Impact factor: 3.169

Review 9.  In silico modeling of the immune system: cellular and molecular scale approaches.

Authors:  Mariagrazia Belfiore; Marzio Pennisi; Giuseppina Aricò; Simone Ronsisvalle; Francesco Pappalardo
Journal:  Biomed Res Int       Date:  2014-04-06       Impact factor: 3.411

10.  Modeling cell adhesion and proliferation: a cellular-automata based approach.

Authors:  J Vivas; D Garzón-Alvarado; M Cerrolaza
Journal:  Adv Model Simul Eng Sci       Date:  2015-12-02
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.