Literature DB >> 22144199

MicroRNA expression analysis using the Illumina microRNA-Seq Platform.

Shujun Luo1.   

Abstract

Direct sequencing of RNA molecules using next-generation sequencing (NGS) technology has revolutionized the analysis of transcriptome with its massively parallel throughput and low cost. Here, we describe Illumina's microRNA-Seq, a method for sequencing microRNA using the Illumina Genome Analyzer system. The sequence data generated from this method enables direct identifying and profiling of microRNAs in any given organism. It also sheds light in understanding the biogenesis and modification of microRNA.

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Year:  2012        PMID: 22144199     DOI: 10.1007/978-1-61779-427-8_12

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  8 in total

1.  Identification of key factors regulating self-renewal and differentiation in EML hematopoietic precursor cells by RNA-sequencing analysis.

Authors:  Shan Zong; Shuyun Deng; Kenian Chen; Jia Qian Wu
Journal:  J Vis Exp       Date:  2014-11-11       Impact factor: 1.355

2.  Genome-wide Analysis of HDAC Inhibitor-mediated Modulation of microRNAs and mRNAs in B Cells Induced to Undergo Class-switch DNA Recombination and Plasma Cell Differentiation.

Authors:  Helia N Sanchez; Tian Shen; Dawn Garcia; Zhao Lai; Paolo Casali; Hong Zan
Journal:  J Vis Exp       Date:  2017-09-20       Impact factor: 1.355

3.  Lipopolysaccharide perception leads to dynamic alterations in the microtranscriptome of Arabidopsis thaliana cells and leaf tissues.

Authors:  Arnaud T Djami-Tchatchou; Ian A Dubery
Journal:  BMC Plant Biol       Date:  2015-03-07       Impact factor: 4.215

4.  Identification and removal of sequencing artifacts produced by mispriming during reverse transcription in multiple RNA-seq technologies.

Authors:  Haridha Shivram; Vishwanath R Iyer
Journal:  RNA       Date:  2018-06-27       Impact factor: 4.942

5.  Genome-wide microRNA profiles identify miR-107 as a top miRNA associating with expression of the CYP3As and other drug metabolizing cytochrome P450 enzymes in the liver.

Authors:  Marwa Tantawy; Joseph M Collins; Danxin Wang
Journal:  Front Pharmacol       Date:  2022-08-17       Impact factor: 5.988

6.  The complex exogenous RNA spectra in human plasma: an interface with human gut biota?

Authors:  Kai Wang; Hong Li; Yue Yuan; Alton Etheridge; Yong Zhou; David Huang; Paul Wilmes; David Galas
Journal:  PLoS One       Date:  2012-12-10       Impact factor: 3.240

7.  Identification and characterisation of microRNAs in young adults of Angiostrongylus cantonensis via a deep-sequencing approach.

Authors:  Shih-Hsin Chang; Petrus Tang; Cheng-Hung Lai; Ming-Ling Kuo; Lian-Chen Wang
Journal:  Mem Inst Oswaldo Cruz       Date:  2013-09       Impact factor: 2.743

8.  Small non-coding RNA transcriptome of four high-altitude vertebrates and their low-altitude relatives.

Authors:  Keren Long; Siyuan Feng; Jideng Ma; Jinwei Zhang; Long Jin; Qianzi Tang; Xun Wang; Miaomiao Mai; Weihang Xiao; Lingyan Liu; Xuewei Li; Mingzhou Li
Journal:  Sci Data       Date:  2019-10-04       Impact factor: 6.444

  8 in total

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