Literature DB >> 22144189

Introduction to miRNA profiling technologies and cross-platform comparison.

Sarah Aldridge1, James Hadfield.   

Abstract

MicroRNA analysis has been widely adopted for basic and applied science. The tools and technologies available for quantifying and analysing miRNAs are still maturing. Here, we give an introductory overview of the main tools and the challenges in their use. We also discuss the importance of basic experimental design, sample handling and analysis methods as the impact of these can be as profound as the choice of miRNA analysis platform. Whether the reader is interested in a gene-by-gene or genome-wide approach choosing the platform to use is not trivial. Careful thought given before starting an experiment will make the execution much easier.

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Year:  2012        PMID: 22144189     DOI: 10.1007/978-1-61779-427-8_2

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  11 in total

1.  Two-tailed RT-qPCR: a novel method for highly accurate miRNA quantification.

Authors:  Peter Androvic; Lukas Valihrach; Julie Elling; Robert Sjoback; Mikael Kubista
Journal:  Nucleic Acids Res       Date:  2017-09-06       Impact factor: 16.971

2.  Identification of extracellular miRNA in human cerebrospinal fluid by next-generation sequencing.

Authors:  Kasandra Lovette Burgos; Ashkan Javaherian; Roberto Bomprezzi; Layla Ghaffari; Susan Rhodes; Amanda Courtright; Waibhav Tembe; Seungchan Kim; Raghu Metpally; Kendall Van Keuren-Jensen
Journal:  RNA       Date:  2013-03-22       Impact factor: 4.942

Review 3.  MicroRNA biomarkers in glioblastoma.

Authors:  Simon Kjær Hermansen; Bjarne Winther Kristensen
Journal:  J Neurooncol       Date:  2013-05-23       Impact factor: 4.130

4.  Comparison of microarray platforms for measuring differential microRNA expression in paired normal/cancer colon tissues.

Authors:  Maurizio Callari; Matteo Dugo; Valeria Musella; Edoardo Marchesi; Giovanna Chiorino; Maurizia Mello Grand; Marco Alessandro Pierotti; Maria Grazia Daidone; Silvana Canevari; Loris De Cecco
Journal:  PLoS One       Date:  2012-09-13       Impact factor: 3.240

5.  Identification of aberrant circulating miRNAs in Parkinson's disease plasma samples.

Authors:  Lei Chen; Junxiu Yang; Jinhui Lü; Shanshan Cao; Qian Zhao; Zuoren Yu
Journal:  Brain Behav       Date:  2018-02-19       Impact factor: 2.708

6.  MiR-99b-5p and miR-203a-3p Function as Tumor Suppressors by Targeting IGF-1R in Gastric Cancer.

Authors:  Zhenzhen Wang; Zhenghao Zhao; Yang Yang; Mai Luo; Min Zhang; Xiaofei Wang; Liying Liu; Ni Hou; Qingqing Guo; Tusheng Song; Bo Guo; Chen Huang
Journal:  Sci Rep       Date:  2018-07-04       Impact factor: 4.379

7.  Linear-hairpin variable primer RT-qPCR for MicroRNA.

Authors:  Lin Lan; Qiuping Guo; Hemin Nie; Chang Zhou; Qingyun Cai; Jin Huang; Xiangxian Meng
Journal:  Chem Sci       Date:  2018-12-04       Impact factor: 9.825

8.  Differential expression of miR-184 in temporal lobe epilepsy patients with and without hippocampal sclerosis - Influence on microglial function.

Authors:  Bénédicte Danis; Marijke van Rikxoort; Anita Kretschmann; Jiong Zhang; Patrice Godard; Lidija Andonovic; Franziska Siegel; Pitt Niehusmann; Etienne Hanon; Daniel Delev; Marec von Lehe; Rafal M Kaminski; Alexander Pfeifer; Patrik Foerch
Journal:  Sci Rep       Date:  2016-09-26       Impact factor: 4.379

9.  Selection and Application of Tissue microRNAs for Nonendoscopic Diagnosis of Barrett's Esophagus.

Authors:  Xiaodun Li; Sam Kleeman; Sally B Coburn; Carlo Fumagalli; Juliane Perner; Sriganesh Jammula; Ruth M Pfeiffer; Linda Orzolek; Haiping Hao; Philip R Taylor; Ahmad Miremadi; Núria Galeano-Dalmau; Pierre Lao-Sirieix; Maria Tennyson; Shona MacRae; Michael B Cook; Rebecca C Fitzgerald
Journal:  Gastroenterology       Date:  2018-06-12       Impact factor: 22.682

Review 10.  Expression, Regulation and Function of microRNA as Important Players in the Transition of MDS to Secondary AML and Their Cross Talk to RNA-Binding Proteins.

Authors:  Marcus Bauer; Christoforos Vaxevanis; Nadine Heimer; Haifa Kathrin Al-Ali; Nadja Jaekel; Michael Bachmann; Claudia Wickenhauser; Barbara Seliger
Journal:  Int J Mol Sci       Date:  2020-09-27       Impact factor: 5.923

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