Literature DB >> 22144150

From metabolic reactions to networks and pathways.

Masanori Arita1.   

Abstract

Enzymatic reactions form a hypergraph structure and their translation into a graph structure accompanies an information loss. This chapter introduces well-known topological transformations from metabolic reactions to a graph, and discusses their advantages and disadvantages. Also discussed is the legitimacy of defining cofactors or currency metabolites, and suitable application area of each representation.

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Year:  2012        PMID: 22144150     DOI: 10.1007/978-1-61779-361-5_6

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  3 in total

1.  Weighting schemes in metabolic graphs for identifying biochemical routes.

Authors:  S Ghosh; P Baloni; S Vishveshwara; N Chandra
Journal:  Syst Synth Biol       Date:  2013-11-06

2.  What mRNA Abundances Can Tell us about Metabolism.

Authors:  Andreas Hoppe
Journal:  Metabolites       Date:  2012-09-12

3.  Metabolic pathways synthesis based on ant colony optimization.

Authors:  Matias F Gerard; Georgina Stegmayer; Diego H Milone
Journal:  Sci Rep       Date:  2018-11-06       Impact factor: 4.379

  3 in total

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