Literature DB >> 22139657

SNaPshot® minisequencing analysis of multiple ancestry-informative Y-SNPs using capillary electrophoresis.

Maria Geppert1, Lutz Roewer.   

Abstract

This protocol describes a strategy for analyzing phylogenetic Y-SNPs in a hierarchical multiplex assay by utilizing the SNaPshot(®) Multiplex System. Step by step, the protocol assists in the appropriate selection of SNPs, the primer design, the set up of PCR/SBE reactions as well as in the analysis of the results. Furthermore, a forensic approach is highlighted, in which the most probable ancestry of an unknown male DNA is inferred by the geographical distribution of the assigned Y-SNP haplogroup.

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Year:  2012        PMID: 22139657     DOI: 10.1007/978-1-61779-461-2_9

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  6 in total

1.  Inferring population structure and relationship using minimal independent evolutionary markers in Y-chromosome: a hybrid approach of recursive feature selection for hierarchical clustering.

Authors:  Amit Kumar Srivastava; Rupali Chopra; Shafat Ali; Shweta Aggarwal; Lovekesh Vig; Rameshwar Nath Koul Bamezai
Journal:  Nucleic Acids Res       Date:  2014-07-16       Impact factor: 16.971

2.  AmericaPlex26: a SNaPshot multiplex system for genotyping the main human mitochondrial founder lineages of the Americas.

Authors:  Alexandra Coutinho; Guido Valverde; Lars Fehren-Schmitz; Alan Cooper; Maria Inés Barreto Romero; Isabel Flores Espinoza; Bastien Llamas; Wolfgang Haak
Journal:  PLoS One       Date:  2014-03-26       Impact factor: 3.240

3.  New insights on intercontinental origins of paternal lineages in Northeast Brazil.

Authors:  Ana Paula Schaan; Leonor Gusmão; Juliana Jannuzzi; Antonio Modesto; Marcos Amador; Diego Marques; Silvia Helena Rabenhorst; Raquel Montenegro; Thayson Lopes; France Keiko Yoshioka; Giovanny Pinto; Sidney Santos; Lorenna Costa; Vivian Silbiger; Ândrea Ribeiro-Dos-Santos
Journal:  BMC Evol Biol       Date:  2020-01-29       Impact factor: 3.260

4.  Validation of 58 autosomal individual identification SNPs in three Chinese populations.

Authors:  Yi-Liang Wei; Cui-Jiao Qin; Hai-Bo Liu; Jing Jia; Lan Hu; Cai-Xia Li
Journal:  Croat Med J       Date:  2014-02       Impact factor: 1.351

5.  Male Lineages in Brazil: Intercontinental Admixture and Stratification of the European Background.

Authors:  Rafael Resque; Leonor Gusmão; Maria Geppert; Lutz Roewer; Teresinha Palha; Luis Alvarez; Ândrea Ribeiro-dos-Santos; Sidney Santos
Journal:  PLoS One       Date:  2016-04-05       Impact factor: 3.240

6.  Comparative study between Helicobacter pylori and host human genetics in the Dominican Republic.

Authors:  Takaaki Ono; Modesto Cruz; José A Jiménez Abreu; Hiroyuki Nagashima; Phawinee Subsomwong; Celso Hosking; Seiji Shiota; Rumiko Suzuki; Yoshio Yamaoka
Journal:  BMC Evol Biol       Date:  2019-11-01       Impact factor: 3.260

  6 in total

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