Literature DB >> 22139179

Cloning, expression, purification, crystallization and preliminary X-ray diffraction studies of a major group 7 allergen, Der f 7, from the dust mite Dermatophagoides farinae.

Kang Wei Tan1, Sundramurthy Kumar, Fook Tim Chew, Yu Keung Mok.   

Abstract

Der f 7 is a major group 7 allergen from the dust mite Dermatophagoides farinae that shows 86% sequence identity to the homologous allergen Der p 7 from D. pteronyssinus. Der f 7 was successfully overexpressed in an Escherichia coli expression system and purified to homogeneity using Ni-NTA affinity and size-exclusion column chromatography. SeMet-labelled Der f 7 was crystallized by the hanging-drop vapour-diffusion method using a reservoir solution consisting of 0.1 M bis-tris pH 7.4 and 28% polyethylene glycol monomethyl ether 2000 at 293 K. X-ray diffraction data were collected to 2.24 Å resolution using synchrotron radiation. The crystals belonged to the orthorhombic system, space group P2(1)2(1)2(1), with unit-cell parameters a = 50.19, b = 58.67, c = 123.81 Å. Based on the estimated Matthews coefficient (2.16 Å(3) Da(-1)), two molecules of Der f 7 could be present in the asymmetric unit of the crystal lattice.

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Year:  2011        PMID: 22139179      PMCID: PMC3232152          DOI: 10.1107/S174430911103836X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  12 in total

1.  Matthews coefficient probabilities: Improved estimates for unit cell contents of proteins, DNA, and protein-nucleic acid complex crystals.

Authors:  Katherine A Kantardjieff; Bernhard Rupp
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

2.  Locating proteins in the cell using TargetP, SignalP and related tools.

Authors:  Olof Emanuelsson; Søren Brunak; Gunnar von Heijne; Henrik Nielsen
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

3.  Asp159 is a critical core amino acid of an IgE-binding and cross-reactive epitope of a dust mite allergen Der f 7.

Authors:  H Chou; M F Tam; S-S Lee; R-B Tang; T-H Lin; H-Y Tai; Y-S Chen; H-D Shen
Journal:  Mol Immunol       Date:  2011-08-05       Impact factor: 4.407

4.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

5.  Molecular cloning of a house dust mite allergen with common antibody binding specificities with multiple components in mite extracts.

Authors:  H D Shen; K Y Chua; K L Lin; K H Hsieh; W R Thomas
Journal:  Clin Exp Allergy       Date:  1993-11       Impact factor: 5.018

6.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

7.  Homology modeling and monoclonal antibody binding of the Der f 7 dust mite allergen.

Authors:  Horng-Der Shen; Ming F Tam; Chao-Hsien Huang; Hong Chou; Hsiao-Yun Tai; Yu-Sen Chen; Sheh-Yi Sheu; Wayne R Thomas
Journal:  Immunol Cell Biol       Date:  2010-06-22       Impact factor: 5.126

8.  The structure of the dust mite allergen Der p 7 reveals similarities to innate immune proteins.

Authors:  Geoffrey A Mueller; Lori L Edwards; Jim J Aloor; Michael B Fessler; Jill Glesner; Anna Pomés; Martin D Chapman; Robert E London; Lars C Pedersen
Journal:  J Allergy Clin Immunol       Date:  2010-03-11       Impact factor: 10.793

9.  Cloning, expression, and characterization of Der f 7, an allergen of Dermatophagoides farinae from China.

Authors:  Yu-bao Cui; Hong-xing Cai; Ying Zhou; Cui-xiang Gao; Wei-hong Shi; Ming Yu; Li Li
Journal:  J Med Entomol       Date:  2010-09       Impact factor: 2.278

10.  Molecular cloning and immunological characterization of the house dust mite allergen Der f 7.

Authors:  H D Shen; K Y Chua; W L Lin; K H Hsieh; W R Thomas
Journal:  Clin Exp Allergy       Date:  1995-10       Impact factor: 5.018

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  2 in total

1.  Crystal structure of Der f 7, a dust mite allergen from Dermatophagoides farinae.

Authors:  Kang Wei Tan; Chacko Jobichen; Tan Ching Ong; Yun Feng Gao; Yuen Sung Tiong; Kang Ning Wong; Fook Tim Chew; J Sivaraman; Yu Keung Mok
Journal:  PLoS One       Date:  2012-09-06       Impact factor: 3.240

2.  Crystals on the cover 2012.

Authors:  Howard Einspahr; Manfred S Weiss
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-12-24
  2 in total

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