Literature DB >> 22139156

Structure of the H107R variant of the extracellular domain of mouse NKR-P1A at 2.3 Å resolution.

Petr Kolenko1, Daniel Rozbeský, Ondřej Vaněk, Karel Bezouška, Jindřich Hašek, Jan Dohnálek.   

Abstract

The structure of the H107R variant of the extracellular domain of the mouse natural killer cell receptor NKR-P1A has been determined by X-ray diffraction at 2.3 Å resolution from a merohedrally twinned crystal. Unlike the structure of the wild-type receptor in space group I4(1)22 with a single chain per asymmetric unit, the crystals of the variant belonged to space group I4(1) with a dimer in the asymmetric unit. Different degrees of merohedral twinning were detected in five data sets collected from different crystals. The mutation does not have a significant impact on the overall structure, but led to the binding of an additional phosphate ion at the interface of the molecules.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 22139156      PMCID: PMC3232129          DOI: 10.1107/S1744309111046203

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  17 in total

Review 1.  NKR-P1 biology: from prototype to missing self.

Authors:  Aruz Mesci; Belma Ljutic; Andrew P Makrigiannis; James R Carlyle
Journal:  Immunol Res       Date:  2006       Impact factor: 2.829

Review 2.  Functions of natural killer cells.

Authors:  Eric Vivier; Elena Tomasello; Myriam Baratin; Thierry Walzer; Sophie Ugolini
Journal:  Nat Immunol       Date:  2008-05       Impact factor: 25.606

3.  Molecular architecture of mouse activating NKR-P1 receptors.

Authors:  Petr Kolenko; Daniel Rozbeský; Ondřej Vaněk; Vladimír Kopecký; Kateřina Hofbauerová; Petr Novák; Petr Pompach; Jindřich Hašek; Tereza Skálová; Karel Bezouška; Jan Dohnálek
Journal:  J Struct Biol       Date:  2011-05-12       Impact factor: 2.867

4.  Class I MHC-binding characteristics of the 129/J Ly49 repertoire.

Authors:  A P Makrigiannis; A T Pau; A Saleh; R Winkler-Pickett; J R Ortaldo; S K Anderson
Journal:  J Immunol       Date:  2001-04-15       Impact factor: 5.422

5.  Cutting edge: lectin-like transcript 1 is a ligand for the CD161 receptor.

Authors:  Hatice Aldemir; Virginie Prod'homme; Marie-Jeanne Dumaurier; Christelle Retiere; Gwenola Poupon; Julie Cazareth; Franck Bihl; Veronique M Braud
Journal:  J Immunol       Date:  2005-12-15       Impact factor: 5.422

6.  Oligosaccharide ligands for NKR-P1 protein activate NK cells and cytotoxicity.

Authors:  K Bezouska; C T Yuen; J O'Brien; R A Childs; W Chai; A M Lawson; K Drbal; A Fiserová; M Pospísil; T Feizi
Journal:  Nature       Date:  1994-11-10       Impact factor: 49.962

7.  Two major groups of rat NKR-P1 receptors can be distinguished based on chromosomal localization, phylogenetic analysis and Clr ligand binding.

Authors:  Lise Kveberg; Ke-Zheng Dai; Ingunn H Westgaard; Michael R Daws; Sigbjørn Fossum; Christian Naper; John T Vaage
Journal:  Eur J Immunol       Date:  2009-02       Impact factor: 5.532

8.  REFMAC5 for the refinement of macromolecular crystal structures.

Authors:  Garib N Murshudov; Pavol Skubák; Andrey A Lebedev; Navraj S Pannu; Roberto A Steiner; Robert A Nicholls; Martyn D Winn; Fei Long; Alexei A Vagin
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

9.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

10.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21
View more
  3 in total

1.  Nkrp1 family, from lectins to protein interacting molecules.

Authors:  Daniel Rozbeský; Ljubina Ivanova; Lucie Hernychová; Valéria Grobárová; Petr Novák; Jan Černý
Journal:  Molecules       Date:  2015-02-17       Impact factor: 4.411

Review 2.  Complexity and Diversity of the NKR-P1:Clr (Klrb1:Clec2) Recognition Systems.

Authors:  Christina L Kirkham; James R Carlyle
Journal:  Front Immunol       Date:  2014-06-02       Impact factor: 7.561

3.  Four crystal structures of human LLT1, a ligand of human NKR-P1, in varied glycosylation and oligomerization states.

Authors:  Tereza Skálová; Jan Bláha; Karl Harlos; Jarmila Dušková; Tomáš Koval'; Jan Stránský; Jindřich Hašek; Ondřej Vaněk; Jan Dohnálek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-02-26
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.