Literature DB >> 22138473

Length-dependent compaction of intrinsically disordered proteins.

Vladimir N Uversky1, Carlo Santambrogio, Stefania Brocca, Rita Grandori.   

Abstract

This work investigates the effect of chain length on the degree of compaction of intrinsically disordered proteins (IDPs). The three main IDP types, native coil (NC), pre-molten globule (PMG) and molten globule (MG), are compared by means of a compaction index (CI) normalized for chain length. The results point out a strong variability of compactness as a function of chain length within each group, with larger proteins populating more compact states. While qualitative sequence features are responsible for the main differences among groups, chain length seems to have an unspecific effect modulating the extent of compaction within each group. The results are consistent with a cooperative character of the weak interactions responsible for chain collapse.
Copyright © 2011 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.

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Year:  2011        PMID: 22138473     DOI: 10.1016/j.febslet.2011.11.026

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  13 in total

Review 1.  Physicochemical properties of cells and their effects on intrinsically disordered proteins (IDPs).

Authors:  Francois-Xavier Theillet; Andres Binolfi; Tamara Frembgen-Kesner; Karan Hingorani; Mohona Sarkar; Ciara Kyne; Conggang Li; Peter B Crowley; Lila Gierasch; Gary J Pielak; Adrian H Elcock; Anne Gershenson; Philipp Selenko
Journal:  Chem Rev       Date:  2014-06-05       Impact factor: 60.622

Review 2.  Physical Chemistry of the Protein Backbone: Enabling the Mechanisms of Intrinsic Protein Disorder.

Authors:  Justin A Drake; B Montgomery Pettitt
Journal:  J Phys Chem B       Date:  2020-05-14       Impact factor: 2.991

3.  Solvation Thermodynamics of Oligoglycine with Respect to Chain Length and Flexibility.

Authors:  Justin A Drake; Robert C Harris; B Montgomery Pettitt
Journal:  Biophys J       Date:  2016-08-23       Impact factor: 4.033

4.  Molecular basis for structural heterogeneity of an intrinsically disordered protein bound to a partner by combined ESI-IM-MS and modeling.

Authors:  Annalisa D'Urzo; Albert Konijnenberg; Giulia Rossetti; Johnny Habchi; Jinyu Li; Paolo Carloni; Frank Sobott; Sonia Longhi; Rita Grandori
Journal:  J Am Soc Mass Spectrom       Date:  2014-12-16       Impact factor: 3.109

5.  Tandem phosphorylation within an intrinsically disordered region regulates ACTN4 function.

Authors:  Timothy Travers; Hanshuang Shao; Brian A Joughin; Douglas A Lauffenburger; Alan Wells; Carlos J Camacho
Journal:  Sci Signal       Date:  2015-05-26       Impact factor: 8.192

6.  Pulse-field gradient nuclear magnetic resonance of protein translational diffusion from native to non-native states.

Authors:  Richard D Whitehead; Carolyn M Teschke; Andrei T Alexandrescu
Journal:  Protein Sci       Date:  2022-05       Impact factor: 6.993

7.  The Two-State Prehensile Tail of the Antibacterial Toxin Colicin N.

Authors:  Christopher L Johnson; Alexandra S Solovyova; Olli Hecht; Colin Macdonald; Helen Waller; J Günter Grossmann; Geoffrey R Moore; Jeremy H Lakey
Journal:  Biophys J       Date:  2017-10-17       Impact factor: 4.033

8.  Order from disorder in the sarcomere: FATZ forms a fuzzy but tight complex and phase-separated condensates with α-actinin.

Authors:  Antonio Sponga; Joan L Arolas; Thomas C Schwarz; Cy M Jeffries; Ariadna Rodriguez Chamorro; Julius Kostan; Andrea Ghisleni; Friedel Drepper; Anton Polyansky; Euripedes De Almeida Ribeiro; Miriam Pedron; Anna Zawadzka-Kazimierczuk; Georg Mlynek; Thomas Peterbauer; Pierantonio Doto; Claudia Schreiner; Eneda Hollerl; Borja Mateos; Leonhard Geist; Georgine Faulkner; Wiktor Kozminski; Dmitri I Svergun; Bettina Warscheid; Bojan Zagrovic; Mathias Gautel; Robert Konrat; Kristina Djinović-Carugo
Journal:  Sci Adv       Date:  2021-05-28       Impact factor: 14.957

9.  Cooperative unfolding of compact conformations of the intrinsically disordered protein osteopontin.

Authors:  Dennis Kurzbach; Gerald Platzer; Thomas C Schwarz; Morkos A Henen; Robert Konrat; Dariush Hinderberger
Journal:  Biochemistry       Date:  2013-07-24       Impact factor: 3.162

Review 10.  Molecular signaling involving intrinsically disordered proteins in prostate cancer.

Authors:  Anna Russo; Sara La Manna; Ettore Novellino; Anna Maria Malfitano; Daniela Marasco
Journal:  Asian J Androl       Date:  2016 Sep-Oct       Impact factor: 3.285

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