Literature DB >> 22137968

Multistability and oscillations in genetic control of metabolism.

Diego A Oyarzún1, Madalena Chaves, Marit Hoff-Hoffmeyer-Zlotnik.   

Abstract

Genetic control of enzyme activity drives metabolic adaptations to environmental changes, and therefore the feedback interaction between gene expression and metabolism is essential to cell fitness. In this paper we develop a new formalism to detect the equilibrium regimes of an unbranched metabolic network under transcriptional feedback from one metabolite. Our results indicate that one-to-all transcriptional feedback can induce a wide range of metabolic phenotypes, including mono-, multistability and oscillatory behavior. The analysis is based on the use of switch-like models for transcriptional control and the exploitation of the time scale separation between metabolic and genetic dynamics. For any combination of activation and repression feedback loops, we derive conditions for the emergence of a specific phenotype in terms of genetic parameters such as enzyme expression rates and regulatory thresholds. We find that metabolic oscillations can emerge under uniform thresholds and, in the case of operon-controlled networks, the analysis reveals how nutrient-induced bistability and oscillations can emerge as a consequence of the transcriptional feedback.
Copyright © 2011 Elsevier Ltd. All rights reserved.

Mesh:

Year:  2011        PMID: 22137968     DOI: 10.1016/j.jtbi.2011.11.017

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  6 in total

1.  Design of a bistable switch to control cellular uptake.

Authors:  Diego A Oyarzún; Madalena Chaves
Journal:  J R Soc Interface       Date:  2015-12-06       Impact factor: 4.118

2.  Synthetic gene circuits for metabolic control: design trade-offs and constraints.

Authors:  Diego A Oyarzún; Guy-Bart V Stan
Journal:  J R Soc Interface       Date:  2012-11-08       Impact factor: 4.118

3.  Crosstalk and the Dynamical Modularity of Feed-Forward Loops in Transcriptional Regulatory Networks.

Authors:  Michael A Rowland; Ahmed Abdelzaher; Preetam Ghosh; Michael L Mayo
Journal:  Biophys J       Date:  2017-04-25       Impact factor: 4.033

4.  Maintaining maximal metabolic flux by gene expression control.

Authors:  Robert Planqué; Josephus Hulshof; Bas Teusink; Johannes C Hendriks; Frank J Bruggeman
Journal:  PLoS Comput Biol       Date:  2018-09-20       Impact factor: 4.475

5.  Adaptive Benefits of Storage Strategy and Dual AMPK/TOR Signaling in Metabolic Stress Response.

Authors:  Benjamin Pfeuty; Quentin Thommen
Journal:  PLoS One       Date:  2016-08-09       Impact factor: 3.240

6.  Mathematical Modeling of Streptococcus pneumoniae Colonization, Invasive Infection and Treatment.

Authors:  Elisa Domínguez-Hüttinger; Neville J Boon; Thomas B Clarke; Reiko J Tanaka
Journal:  Front Physiol       Date:  2017-03-02       Impact factor: 4.566

  6 in total

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