Literature DB >> 22137751

Transcriptome analysis of an oil-rich race A strain of Botryococcus braunii (BOT-88-2) by de novo assembly of pyrosequencing cDNA reads.

Masato Baba1, Motohide Ioki, Nobuyoshi Nakajima, Yoshihiro Shiraiwa, Makoto M Watanabe.   

Abstract

To gain genetic information of oil-producing algae Botryococcus braunii, a novel dataset of 185,936 complementary DNA (cDNA) reads was obtained via pyrosequencing for the representative race A strain (strain BOT-88-2) exhibiting high oil productivity. The cDNA reads were assembled to retrieve 29,038 non-redundant sequences and 964 of them were successfully annotated based on similarity to database sequences. The transcriptome data embraced candidate genes for majority of enzymes involved in the biosynthesis of unsaturated very long-chain fatty acids. The transcriptome dataset has been deposited in the GenBank/EMBL/DDBJ database.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID： 22137751     DOI： 10.1016/j.biortech.2011.10.033

Source DB:  PubMed          Journal:  Bioresour Technol        ISSN： 0960-8524            Impact factor:   9.642


  10 in total

Review 1.  Algal omics: unlocking bioproduct diversity in algae cell factories.

Authors:  Michael T Guarnieri; Philip T Pienkos
Journal:  Photosynth Res       Date:  2014-03-14       Impact factor: 3.573

2.  Colony organization in the green alga Botryococcus braunii (Race B) is specified by a complex extracellular matrix.

Authors:  Taylor L Weiss; Robyn Roth; Carrie Goodson; Stanislav Vitha; Ian Black; Parastoo Azadi; Jannette Rusch; Andreas Holzenburg; Timothy P Devarenne; Ursula Goodenough
Journal:  Eukaryot Cell       Date:  2012-08-31

3.  Desiccation tolerance of Botryococcus braunii (Trebouxiophyceae, Chlorophyta) and extreme temperature tolerance of dehydrated cells.

Authors:  Mikihide Demura; Motohide Ioki; Masanobu Kawachi; Nobuyoshi Nakajima; Makoto M Watanabe
Journal:  J Appl Phycol       Date:  2013-07-17       Impact factor: 3.215

4.  Nitrogen deprivation-induced de novo transcriptomic profiling of the oleaginous green alga Botryococcus braunii 779.

Authors:  Zhenyu Xu; Jing He; Shuyuan Qi; Jianhua Liu
Journal:  Genom Data       Date:  2015-10-24

5.  Feasibility and transcriptomic analysis of betalain production by biomembrane surface fermentation of Penicillium novae-zelandiae.

Authors:  Hailei Wang; Yi Li; Kun Zhang; Yingqun Ma; Ping Li
Journal:  AMB Express       Date:  2018-01-08       Impact factor: 3.298

6.  Comparative transcriptome analyses of oleaginous Botryococcus braunii race A reveal significant differences in gene expression upon cobalt enrichment.

Authors:  Pengfei Cheng; Chengxu Zhou; Yan Wang; Zhihui Xu; Jilin Xu; Dongqing Zhou; Yinghui Zhang; Haizhen Wu; Xuezhi Zhang; Tianzhong Liu; Ming Tang; Qiyong Yang; Xiaojun Yan; Jianhua Fan
Journal:  Biotechnol Biofuels       Date:  2018-12-18       Impact factor: 6.040

7.  Transcriptome analysis reveals unique C4-like photosynthesis and oil body formation in an arachidonic acid-rich microalga Myrmecia incisa Reisigl H4301.

Authors:  Long-Ling Ouyang; Si-Hong Chen; Yan Li; Zhi-Gang Zhou
Journal:  BMC Genomics       Date:  2013-06-13       Impact factor: 3.969

8.  Transcriptomic analysis of the oleaginous microalga Neochloris oleoabundans reveals metabolic insights into triacylglyceride accumulation.

Authors:  Hamid Rismani-Yazdi; Berat Z Haznedaroglu; Carol Hsin; Jordan Peccia
Journal:  Biotechnol Biofuels       Date:  2012-09-24       Impact factor: 6.040

9.  Bio-crude transcriptomics: gene discovery and metabolic network reconstruction for the biosynthesis of the terpenome of the hydrocarbon oil-producing green alga, Botryococcus braunii race B (Showa).

Authors:  István Molnár; David Lopez; Jennifer H Wisecaver; Timothy P Devarenne; Taylor L Weiss; Matteo Pellegrini; Jeremiah D Hackett
Journal:  BMC Genomics       Date:  2012-10-30       Impact factor: 3.969

10.  Transcriptomic analysis of a moderately growing subisolate Botryococcus braunii 779 (Chlorophyta) in response to nitrogen deprivation.

Authors:  Lei Fang; Deying Sun; Zhenyu Xu; Jing He; Shuyuan Qi; Xin Chen; Wee Chew; Jianhua Liu
Journal:  Biotechnol Biofuels       Date:  2015-08-28       Impact factor: 6.040
  10 in total

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