Literature DB >> 22134744

lncRNAs: finding the forest among the trees?

Marcel E Dinger1.   

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Year:  2011        PMID: 22134744      PMCID: PMC3242670          DOI: 10.1038/mt.2011.251

Source DB:  PubMed          Journal:  Mol Ther        ISSN: 1525-0016            Impact factor:   11.454


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  16 in total

1.  Specific expression of long noncoding RNAs in the mouse brain.

Authors:  Tim R Mercer; Marcel E Dinger; Susan M Sunkin; Mark F Mehler; John S Mattick
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-09       Impact factor: 11.205

Review 2.  Long non-coding RNAs: insights into functions.

Authors:  Tim R Mercer; Marcel E Dinger; John S Mattick
Journal:  Nat Rev Genet       Date:  2009-03       Impact factor: 53.242

Review 3.  RNA regulation of epigenetic processes.

Authors:  John S Mattick; Paulo P Amaral; Marcel E Dinger; Tim R Mercer; Mark F Mehler
Journal:  Bioessays       Date:  2009-01       Impact factor: 4.345

4.  Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation.

Authors:  Marcel E Dinger; Paulo P Amaral; Tim R Mercer; Ken C Pang; Stephen J Bruce; Brooke B Gardiner; Marjan E Askarian-Amiri; Kelin Ru; Giulia Soldà; Cas Simons; Susan M Sunkin; Mark L Crowe; Sean M Grimmond; Andrew C Perkins; John S Mattick
Journal:  Genome Res       Date:  2008-06-18       Impact factor: 9.043

5.  Pervasive transcription of the eukaryotic genome: functional indices and conceptual implications.

Authors:  Marcel E Dinger; Paulo P Amaral; Timothy R Mercer; John S Mattick
Journal:  Brief Funct Genomic Proteomic       Date:  2009-09-21

Review 6.  Between a chicken and a grape: estimating the number of human genes.

Authors:  Mihaela Pertea; Steven L Salzberg
Journal:  Genome Biol       Date:  2010-05-05       Impact factor: 13.583

7.  Most "dark matter" transcripts are associated with known genes.

Authors:  Harm van Bakel; Corey Nislow; Benjamin J Blencowe; Timothy R Hughes
Journal:  PLoS Biol       Date:  2010-05-18       Impact factor: 8.029

8.  The transcriptional landscape of the mammalian genome.

Authors:  P Carninci; T Kasukawa; S Katayama; J Gough; M C Frith; N Maeda; R Oyama; T Ravasi; B Lenhard; C Wells; R Kodzius; K Shimokawa; V B Bajic; S E Brenner; S Batalov; A R R Forrest; M Zavolan; M J Davis; L G Wilming; V Aidinis; J E Allen; A Ambesi-Impiombato; R Apweiler; R N Aturaliya; T L Bailey; M Bansal; L Baxter; K W Beisel; T Bersano; H Bono; A M Chalk; K P Chiu; V Choudhary; A Christoffels; D R Clutterbuck; M L Crowe; E Dalla; B P Dalrymple; B de Bono; G Della Gatta; D di Bernardo; T Down; P Engstrom; M Fagiolini; G Faulkner; C F Fletcher; T Fukushima; M Furuno; S Futaki; M Gariboldi; P Georgii-Hemming; T R Gingeras; T Gojobori; R E Green; S Gustincich; M Harbers; Y Hayashi; T K Hensch; N Hirokawa; D Hill; L Huminiecki; M Iacono; K Ikeo; A Iwama; T Ishikawa; M Jakt; A Kanapin; M Katoh; Y Kawasawa; J Kelso; H Kitamura; H Kitano; G Kollias; S P T Krishnan; A Kruger; S K Kummerfeld; I V Kurochkin; L F Lareau; D Lazarevic; L Lipovich; J Liu; S Liuni; S McWilliam; M Madan Babu; M Madera; L Marchionni; H Matsuda; S Matsuzawa; H Miki; F Mignone; S Miyake; K Morris; S Mottagui-Tabar; N Mulder; N Nakano; H Nakauchi; P Ng; R Nilsson; S Nishiguchi; S Nishikawa; F Nori; O Ohara; Y Okazaki; V Orlando; K C Pang; W J Pavan; G Pavesi; G Pesole; N Petrovsky; S Piazza; J Reed; J F Reid; B Z Ring; M Ringwald; B Rost; Y Ruan; S L Salzberg; A Sandelin; C Schneider; C Schönbach; K Sekiguchi; C A M Semple; S Seno; L Sessa; Y Sheng; Y Shibata; H Shimada; K Shimada; D Silva; B Sinclair; S Sperling; E Stupka; K Sugiura; R Sultana; Y Takenaka; K Taki; K Tammoja; S L Tan; S Tang; M S Taylor; J Tegner; S A Teichmann; H R Ueda; E van Nimwegen; R Verardo; C L Wei; K Yagi; H Yamanishi; E Zabarovsky; S Zhu; A Zimmer; W Hide; C Bult; S M Grimmond; R D Teasdale; E T Liu; V Brusic; J Quackenbush; C Wahlestedt; J S Mattick; D A Hume; C Kai; D Sasaki; Y Tomaru; S Fukuda; M Kanamori-Katayama; M Suzuki; J Aoki; T Arakawa; J Iida; K Imamura; M Itoh; T Kato; H Kawaji; N Kawagashira; T Kawashima; M Kojima; S Kondo; H Konno; K Nakano; N Ninomiya; T Nishio; M Okada; C Plessy; K Shibata; T Shiraki; S Suzuki; M Tagami; K Waki; A Watahiki; Y Okamura-Oho; H Suzuki; J Kawai; Y Hayashizaki
Journal:  Science       Date:  2005-09-02       Impact factor: 47.728

9.  Widespread transcription at neuronal activity-regulated enhancers.

Authors:  Tae-Kyung Kim; Martin Hemberg; Jesse M Gray; Allen M Costa; Daniel M Bear; Jing Wu; David A Harmin; Mike Laptewicz; Kellie Barbara-Haley; Scott Kuersten; Eirene Markenscoff-Papadimitriou; Dietmar Kuhl; Haruhiko Bito; Paul F Worley; Gabriel Kreiman; Michael E Greenberg
Journal:  Nature       Date:  2010-04-14       Impact factor: 49.962

10.  Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs.

Authors:  Jasmina Ponjavic; Chris P Ponting; Gerton Lunter
Journal:  Genome Res       Date:  2007-03-26       Impact factor: 9.043

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  2 in total

1.  The human transcriptome: an unfinished story.

Authors:  Mihaela Pertea
Journal:  Genes (Basel)       Date:  2012-09       Impact factor: 4.096

2.  Regulated expression of PTPRJ/CD148 and an antisense long noncoding RNA in macrophages by proinflammatory stimuli.

Authors:  Richa K Dave; Marcel E Dinger; Megan Andrew; Marjan Askarian-Amiri; David A Hume; Stuart Kellie
Journal:  PLoS One       Date:  2013-06-28       Impact factor: 3.240

  2 in total

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