Literature DB >> 22132795

Functional genomics of trypanosomatids.

J Choi1, N M El-Sayed.   

Abstract

The decoding of the Tritryp reference genomes nearly 7 years ago provided a first peek into the biology of pathogenic trypanosomatids and a blueprint that has paved the way for genome-wide studies. Although 60-70% of the predicted protein coding genes in Trypanosoma brucei, Trypanosoma cruzi and Leishmania major remain unannotated, the functional genomics landscape is rapidly changing. Facilitated by the advent of next-generation sequencing technologies, improved structural and functional annotation and genes and their products are emerging. Information is also growing for the interactions between cellular components as transcriptomes, regulatory networks and metabolomes are characterized, ushering in a new era of systems biology. Simultaneously, the launch of comparative sequencing of multiple strains of kinetoplastids will finally lead to the investigation of a vast, yet to be explored, evolutionary and pathogenomic space.
© 2011 Blackwell Publishing Ltd.

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Year:  2012        PMID: 22132795     DOI: 10.1111/j.1365-3024.2011.01347.x

Source DB:  PubMed          Journal:  Parasite Immunol        ISSN: 0141-9838            Impact factor:   2.280


  7 in total

1.  The gene product of a Trypanosoma equiperdum ortholog of the cAMP-dependent protein kinase regulatory subunit is a monomeric protein that is not capable of binding cyclic nucleotides.

Authors:  José Bubis; Juan Carlos Martínez; Maritza Calabokis; Joilyneth Ferreira; Carlos E Sanz-Rodríguez; Victoria Navas; José Leonardo Escalona; Yurong Guo; Susan S Taylor
Journal:  Biochimie       Date:  2017-12-27       Impact factor: 4.079

2.  The Comparative Genomics and Phylogenomics of Leishmania amazonensis Parasite.

Authors:  Diogo A Tschoeke; Gisele L Nunes; Rodrigo Jardim; Joana Lima; Aline Sr Dumaresq; Monete R Gomes; Leandro de Mattos Pereira; Daniel R Loureiro; Patricia H Stoco; Herbert Leonel de Matos Guedes; Antonio Basilio de Miranda; Jeronimo Ruiz; André Pitaluga; Floriano P Silva; Christian M Probst; Nicholas J Dickens; Jeremy C Mottram; Edmundo C Grisard; Alberto Mr Dávila
Journal:  Evol Bioinform Online       Date:  2014-09-23       Impact factor: 1.625

3.  Parasite genomics-Time to think bigger.

Authors:  Carlos Talavera-López; Björn Andersson
Journal:  PLoS Negl Trop Dis       Date:  2017-04-20

4.  Intrinsic DNA curvature in trypanosomes.

Authors:  Pablo Smircich; Najib M El-Sayed; Beatriz Garat
Journal:  BMC Res Notes       Date:  2017-11-09

5.  Inducible orthogonal aminoacylation demonstrates that charging is required for mitochondrial tRNA import in Trypanosoma brucei.

Authors:  Jonathan L Huot; Shikha Shikha; André Schneider
Journal:  Sci Rep       Date:  2019-07-25       Impact factor: 4.379

6.  Genomic analysis of sequence-dependent DNA curvature in Leishmania.

Authors:  Pablo Smircich; Diego Forteza; Najib M El-Sayed; Beatriz Garat
Journal:  PLoS One       Date:  2013-04-30       Impact factor: 3.240

7.  Genome of Leptomonas pyrrhocoris: a high-quality reference for monoxenous trypanosomatids and new insights into evolution of Leishmania.

Authors:  Pavel Flegontov; Anzhelika Butenko; Sergei Firsov; Natalya Kraeva; Marek Eliáš; Mark C Field; Dmitry Filatov; Olga Flegontova; Evgeny S Gerasimov; Jana Hlaváčová; Aygul Ishemgulova; Andrew P Jackson; Steve Kelly; Alexei Y Kostygov; Maria D Logacheva; Dmitri A Maslov; Fred R Opperdoes; Amanda O'Reilly; Jovana Sádlová; Tereza Ševčíková; Divya Venkatesh; Čestmír Vlček; Petr Volf; Jan Votýpka; Kristína Záhonová; Vyacheslav Yurchenko; Julius Lukeš
Journal:  Sci Rep       Date:  2016-03-29       Impact factor: 4.379

  7 in total

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