Literature DB >> 22131218

Draft genome sequence of Penicillium marneffei strain PM1.

Patrick C Y Woo1, Susanna K P Lau, Bin Liu, James J Cai, Ken T K Chong, Herman Tse, Richard Y T Kao, Che-Man Chan, Wang-Ngai Chow, Kwok-Yung Yuen.   

Abstract

Penicillium marneffei is the most important thermal dimorphic, pathogenic fungus endemic in China and Southeast Asia and is particularly important in HIV-positive patients. We report the 28,887,485-bp draft genome sequence of P. marneffei, which contains its complete mitochondrial genome, sexual cycle genes, a high diversity of Mp1p homologues, and polyketide synthase genes.

Entities:  

Mesh：

Year:  2011        PMID： 22131218      PMCID： PMC3232717          DOI： 10.1128/EC.05255-11

Source DB:  PubMed          Journal:  Eukaryot Cell        ISSN： 1535-9786


  11 in total

1.  Viewing and editing assembled sequences using Consed.

Authors:  David Gordon
Journal:  Curr Protoc Bioinformatics       Date:  2003-08

2.  Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

Authors:  B Ewing; L Hillier; M C Wendl; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

3.  Base-calling of automated sequencer traces using phred. II. Error probabilities.

Authors:  B Ewing; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

4.  Genomic and experimental evidence for a potential sexual cycle in the pathogenic thermal dimorphic fungus Penicillium marneffei.

Authors:  Patrick C Y Woo; Ken T K Chong; Herman Tse; James J Cai; Candy C Y Lau; Anna C Zhou; Susanna K P Lau; Kwok-yung Yuen
Journal:  FEBS Lett       Date:  2006-05-11       Impact factor: 4.124

5.  High diversity of polyketide synthase genes and the melanin biosynthesis gene cluster in Penicillium marneffei.

Authors:  Patrick C Y Woo; Emily W T Tam; Ken T K Chong; James J Cai; Edward T K Tung; Antonio H Y Ngan; Susanna K P Lau; Kwok-Yung Yuen
Journal:  FEBS J       Date:  2010-08-13       Impact factor: 5.542

6.  Automated finishing with autofinish.

Authors:  D Gordon; C Desmarais; P Green
Journal:  Genome Res       Date:  2001-04       Impact factor: 9.043

7.  The mitochondrial genome of the thermal dimorphic fungus Penicillium marneffei is more closely related to those of molds than yeasts.

Authors:  Patrick C Y Woo; Hongjun Zhen; James J Cai; Jun Yu; Susanna K P Lau; Jian Wang; Jade L L Teng; Samson S Y Wong; Ronald H Tse; Ran Chen; Huanming Yang; Bin Liu; Kwok-yung Yuen
Journal:  FEBS Lett       Date:  2003-12-18       Impact factor: 4.124

8.  MP1 homologue-based multilocus sequence system for typing the pathogenic fungus Penicillium marneffei: a novel approach using lineage-specific genes.

Authors:  Patrick C Y Woo; Candy C Y Lau; Ken T K Chong; Herman Tse; Dominic N C Tsang; Rodney A Lee; Cindy W S Tse; Tak-Lun Que; Liliane M W Chung; Antonio H Y Ngan; Wai-Ting Hui; Samson S Y Wong; Susanna K P Lau; Kwok-Yung Yuen
Journal:  J Clin Microbiol       Date:  2007-09-19       Impact factor: 5.948

9.  Disseminated Penicillium marneffei infection in southeast Asia.

Authors:  K Supparatpinyo; C Khamwan; V Baosoung; K E Nelson; T Sirisanthana
Journal:  Lancet       Date:  1994-07-09       Impact factor: 79.321

10.  The complete genome and proteome of Laribacter hongkongensis reveal potential mechanisms for adaptations to different temperatures and habitats.

Authors:  Patrick C Y Woo; Susanna K P Lau; Herman Tse; Jade L L Teng; Shirly O T Curreem; Alan K L Tsang; Rachel Y Y Fan; Gilman K M Wong; Yi Huang; Nicholas J Loman; Lori A S Snyder; James J Cai; Jian-Dong Huang; William Mak; Mark J Pallen; Si Lok; Kwok-Yung Yuen
Journal:  PLoS Genet       Date:  2009-03-13       Impact factor: 5.917
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  17 in total

Review 1.  Genome Diversity and Evolution in the Budding Yeasts (Saccharomycotina).

Authors:  Bernard A Dujon; Edward J Louis
Journal:  Genetics       Date:  2017-06       Impact factor: 4.562

2.  Unraveling the molecular basis of temperature-dependent genetic regulation in Penicillium marneffei.

Authors:  Ence Yang; Gang Wang; Patrick C Y Woo; Susanna K P Lau; Wang-Ngai Chow; Ken T K Chong; Herman Tse; Richard Y T Kao; Che-Man Chan; Xiaoyan Che; Kwok-Yung Yuen; James J Cai
Journal:  Eukaryot Cell       Date:  2013-07-12

3.  Sixty Years from Segretain's Description: What Have We Learned and Should Learn About the Basic Mycology of Talaromyces marneffei?

Authors:  Chi-Ching Tsang; Susanna K P Lau; Patrick C Y Woo
Journal:  Mycopathologia       Date:  2019-12       Impact factor: 2.574

4.  Identification of microRNA-like RNAs in mycelial and yeast phases of the thermal dimorphic fungus Penicillium marneffei.

Authors:  Susanna K P Lau; Wang-Ngai Chow; Annette Y P Wong; Julian M Y Yeung; Jessie Bao; Na Zhang; Si Lok; Patrick C Y Woo; Kwok-Yung Yuen
Journal:  PLoS Negl Trop Dis       Date:  2013-08-22

5.  Signature gene expression reveals novel clues to the molecular mechanisms of dimorphic transition in Penicillium marneffei.

Authors:  Ence Yang; Wang-Ngai Chow; Gang Wang; Patrick C Y Woo; Susanna K P Lau; Kwok-Yung Yuen; Xiaorong Lin; James J Cai
Journal:  PLoS Genet       Date:  2014-10-16       Impact factor: 5.917

6.  The biosynthetic pathway for a thousand-year-old natural food colorant and citrinin in Penicillium marneffei.

Authors:  Patrick C Y Woo; Ching-Wan Lam; Emily W T Tam; Kim-Chung Lee; Karrie K Y Yung; Chris K F Leung; Kong-Hung Sze; Susanna K P Lau; Kwok-Yung Yuen
Journal:  Sci Rep       Date:  2014-10-22       Impact factor: 4.379

7.  First discovery of two polyketide synthase genes for mitorubrinic acid and mitorubrinol yellow pigment biosynthesis and implications in virulence of Penicillium marneffei.

Authors:  Patrick C Y Woo; Ching-Wan Lam; Emily W T Tam; Chris K F Leung; Samson S Y Wong; Susanna K P Lau; Kwok-Yung Yuen
Journal:  PLoS Negl Trop Dis       Date:  2012-10-18

Review 8.  Talaromyces (Penicillium) marneffei infection in non-HIV-infected patients.

Authors:  Jasper F W Chan; Susanna K P Lau; Kwok-Yung Yuen; Patrick C Y Woo
Journal:  Emerg Microbes Infect       Date:  2016-03-09       Impact factor: 7.163

9.  Mp1p Is a Virulence Factor in Talaromyces (Penicillium) marneffei.

Authors:  Patrick C Y Woo; Susanna K P Lau; Candy C Y Lau; Edward T K Tung; Ken T K Chong; Fengjuan Yang; Hongmin Zhang; Raymond K C Lo; Jian-Pao Cai; Rex K H Au-Yeung; Wing-Fung Ng; Herman Tse; Samson S Y Wong; Simin Xu; Wai Hei Lam; Man-Kit Tse; Kong Hung Sze; Richard Y Kao; Neil E Reiner; Quan Hao; Kwok-Yung Yuen
Journal:  PLoS Negl Trop Dis       Date:  2016-08-25

Review 10.  Harnessing Whole Genome Sequencing in Medical Mycology.

Authors:  Christina A Cuomo
Journal:  Curr Fungal Infect Rep       Date:  2017-06-09
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