Literature DB >> 22130673

Structural insight into activation mechanism of Toxoplasma gondii nucleoside triphosphate diphosphohydrolases by disulfide reduction.

Ulrike Krug1, Matthias Zebisch, Michel Krauss, Norbert Sträter.   

Abstract

The intracellular parasite Toxoplasma gondii produces two nucleoside triphosphate diphosphohydrolases (NTPDase1 and -3). These tetrameric, cysteine-rich enzymes require activation by reductive cleavage of a hitherto unknown disulfide bond. Despite a 97% sequence identity, both isozymes differ largely in their ability to hydrolyze ATP and ADP. Here, we present crystal structures of inactive NTPDase3 as an apo form and in complex with the product AMP to resolutions of 2.0 and 2.2 Å, respectively. We find that the enzyme is present in an open conformation that precludes productive substrate binding and catalysis. The cysteine bridge 258-268 is identified to be responsible for locking of activity. Crystal structures of constitutively active variants of NTPDase1 and -3 generated by mutation of Cys(258)-Cys(268) show that opening of the regulatory cysteine bridge induces a pronounced contraction of the whole tetramer. This is accompanied by a 12° domain closure motion resulting in the correct arrangement of all active site residues. A complex structure of activated NTPDase3 with a non-hydrolyzable ATP analog and the cofactor Mg(2+) to a resolution of 2.85 Å indicates that catalytic differences between the NTPDases are primarily dictated by differences in positioning of the adenine base caused by substitution of Arg(492) and Glu(493) in NTPDase1 by glycines in NTPDase3.

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Year:  2011        PMID: 22130673      PMCID: PMC3270962          DOI: 10.1074/jbc.M111.294348

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  49 in total

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4.  Tandemly repeated genes encode nucleoside triphosphate hydrolase isoforms secreted into the parasitophorous vacuole of Toxoplasma gondii.

Authors:  D Bermudes; K R Peck; M A Afifi; C J Beckers; K A Joiner
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5.  Glucose-induced conformational change in yeast hexokinase.

Authors:  W S Bennett; T A Steitz
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6.  A bacterial ecto-triphosphate diphosphohydrolase similar to human CD39 is essential for intracellular multiplication of Legionella pneumophila.

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7.  Requirement of Cys399 for processing of the human ecto-ATPase (NTPDase2) and its implications for determination of the activities of splice variants of the enzyme.

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8.  Alignment of protein structures in the presence of domain motions.

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10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
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  9 in total

1.  New crystal forms of NTPDase1 from the bacterium Legionella pneumophila.

Authors:  Matthias Zebisch; Petra Schäfer; Peter Lauble; Norbert Sträter
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-02-22

Review 2.  Cellular function and molecular structure of ecto-nucleotidases.

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Journal:  Purinergic Signal       Date:  2012-05-04       Impact factor: 3.765

3.  Structures and kinetics for plant nucleoside triphosphate diphosphohydrolases support a domain motion catalytic mechanism.

Authors:  Emma L Summers; Mathew H Cumming; Tifany Oulavallickal; Nicholas J Roberts; Vickery L Arcus
Journal:  Protein Sci       Date:  2017-06-06       Impact factor: 6.725

Review 4.  Dense granule biogenesis, secretion, and function in Toxoplasma gondii.

Authors:  Michael B Griffith; Camille S Pearce; Aoife T Heaslip
Journal:  J Eukaryot Microbiol       Date:  2022-03-18       Impact factor: 3.880

5.  Crystal structure of the nucleotide-metabolizing enzyme NTPDase4.

Authors:  Alexei Gorelik; Jonathan M Labriola; Katalin Illes; Bhushan Nagar
Journal:  Protein Sci       Date:  2020-09-03       Impact factor: 6.725

6.  The biochemical properties of the Arabidopsis ecto-nucleoside triphosphate diphosphohydrolase AtAPY1 contradict a direct role in purinergic signaling.

Authors:  Carolin Massalski; Jeannine Bloch; Matthias Zebisch; Iris Steinebrunner
Journal:  PLoS One       Date:  2015-03-30       Impact factor: 3.240

7.  The tandemly repeated NTPase (NTPDase) from Neospora caninum is a canonical dense granule protein whose RNA expression, protein secretion and phosphorylation coincides with the tachyzoite egress.

Authors:  Iván Pastor-Fernández; Javier Regidor-Cerrillo; Gema Álvarez-García; Virginia Marugán-Hernández; Paula García-Lunar; Andrew Hemphill; Luis M Ortega-Mora
Journal:  Parasit Vectors       Date:  2016-06-21       Impact factor: 3.876

Review 8.  ATPe Dynamics in Protozoan Parasites. Adapt or Perish.

Authors:  Natalia Lauri; Zaher Bazzi; Cora L Alvarez; María F Leal Denis; Julieta Schachter; Vanesa Herlax; Mariano A Ostuni; Pablo J Schwarzbaum
Journal:  Genes (Basel)       Date:  2018-12-27       Impact factor: 4.096

9.  Establishment of Novel High-Standard Chemiluminescent Assay for NTPase in Two Protozoans and Its High-Throughput Screening.

Authors:  Masamitsu Harada; Jun Nagai; Riho Kurata; Kenji Shimizu; Xiaofeng Cui; Takayuki Isagawa; Hiroaki Semba; Jun Ishihara; Yasuhiro Yoshida; Norihiko Takeda; Koji Maemura; Tomo Yonezawa
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  9 in total

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