Literature DB >> 22127580

The cross-validated AUC for MCP-logistic regression with high-dimensional data.

Dingfeng Jiang1, Jian Huang, Ying Zhang.   

Abstract

We propose a cross-validated area under the receiving operator characteristic (ROC) curve (CV-AUC) criterion for tuning parameter selection for penalized methods in sparse, high-dimensional logistic regression models. We use this criterion in combination with the minimax concave penalty (MCP) method for variable selection. The CV-AUC criterion is specifically designed for optimizing the classification performance for binary outcome data. To implement the proposed approach, we derive an efficient coordinate descent algorithm to compute the MCP-logistic regression solution surface. Simulation studies are conducted to evaluate the finite sample performance of the proposed method and its comparison with the existing methods including the Akaike information criterion (AIC), Bayesian information criterion (BIC) or Extended BIC (EBIC). The model selected based on the CV-AUC criterion tends to have a larger predictive AUC and smaller classification error than those with tuning parameters selected using the AIC, BIC or EBIC. We illustrate the application of the MCP-logistic regression with the CV-AUC criterion on three microarray datasets from the studies that attempt to identify genes related to cancers. Our simulation studies and data examples demonstrate that the CV-AUC is an attractive method for tuning parameter selection for penalized methods in high-dimensional logistic regression models.

Entities:  

Keywords:  Lasso; binary outcome; cross-validation; high-dimensional data; minimax concave penalty; tuning parameter selection

Mesh:

Year:  2011        PMID: 22127580     DOI: 10.1177/0962280211428385

Source DB:  PubMed          Journal:  Stat Methods Med Res        ISSN: 0962-2802            Impact factor:   3.021


  7 in total

1.  Differential influence of distinct components of increased blood pressure on cardiovascular outcomes: from the atherosclerosis risk in communities study.

Authors:  Susan Cheng; Deepak K Gupta; Brian Claggett; A Richey Sharrett; Amil M Shah; Hicham Skali; Madoka Takeuchi; Hanyu Ni; Scott D Solomon
Journal:  Hypertension       Date:  2013-07-22       Impact factor: 10.190

2.  Dietary intervention impact on gut microbial gene richness.

Authors:  Aurélie Cotillard; Sean P Kennedy; Ling Chun Kong; Edi Prifti; Nicolas Pons; Emmanuelle Le Chatelier; Mathieu Almeida; Benoit Quinquis; Florence Levenez; Nathalie Galleron; Sophie Gougis; Salwa Rizkalla; Jean-Michel Batto; Pierre Renault; Joel Doré; Jean-Daniel Zucker; Karine Clément; Stanislav Dusko Ehrlich
Journal:  Nature       Date:  2013-08-29       Impact factor: 49.962

3.  Majorization Minimization by Coordinate Descent for Concave Penalized Generalized Linear Models.

Authors:  Dingfeng Jiang; Jian Huang
Journal:  Stat Comput       Date:  2014-09       Impact factor: 2.559

4.  Classification of ADNI PET Images via Regularized 3D Functional Data Analysis.

Authors:  Xuejing Wang; Bin Nan; Ji Zhu; Robert Koeppe; Kirk Frey
Journal:  Biostat Epidemiol       Date:  2017-03-13

5.  Concave 1-norm group selection.

Authors:  Dingfeng Jiang; Jian Huang
Journal:  Biostatistics       Date:  2014-11-21       Impact factor: 5.279

6.  Silvicolous on a small scale: possibilities and limitations of habitat suitability models for small, elusive mammals in conservation management and landscape planning.

Authors:  Nina I Becker; Jorge A Encarnação
Journal:  PLoS One       Date:  2015-03-17       Impact factor: 3.240

7.  Cross validated serum small extracellular vesicle microRNAs for the detection of oropharyngeal squamous cell carcinoma.

Authors:  G C Mayne; C M Woods; N Dharmawardana; T Wang; S Krishnan; J C Hodge; A Foreman; S Boase; A S Carney; E A W Sigston; D I Watson; E H Ooi; D J Hussey
Journal:  J Transl Med       Date:  2020-07-10       Impact factor: 5.531

  7 in total

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