Literature DB >> 22123769

Genome sequences of three tunicamycin-producing Streptomyces Strains, S. chartreusis NRRL 12338, S. chartreusis NRRL 3882, and S. lysosuperificus ATCC 31396.

James R Doroghazi1, Kou-San Ju, Daren W Brown, David P Labeda, Zixin Deng, William W Metcalf, Wenqing Chen, Neil P J Price.   

Abstract

We announce the sequencing of Streptomyces chartreusis NRRL 12338 and NRRL 3882 and Streptomyces lysosuperificus ATCC 31396. These are producers of tunicamycins, chartreusins, cephalosporins, holomycins, and calcimycin. The announced genomes, together with the published Streptomyces clavuligerus genome, will facilitate data mining of these secondary metabolites.

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Year:  2011        PMID： 22123769      PMCID： PMC3232853          DOI： 10.1128/JB.06262-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  13 in total

1.  Biosynthesis of tunicamycin and metabolic origin of the 11-carbon dialdose sugar, tunicamine.

Authors:  Billyana C Tsvetanova; David J Kiemle; Neil P J Price
Journal:  J Biol Chem       Date:  2002-07-01       Impact factor: 5.157

2.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

3.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

4.  Identification of the gene cluster for the dithiolopyrrolone antibiotic holomycin in Streptomyces clavuligerus.

Authors:  Bo Li; Christopher T Walsh
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-01       Impact factor: 11.205

5.  De novo assembly of human genomes with massively parallel short read sequencing.

Authors:  Ruiqiang Li; Hongmei Zhu; Jue Ruan; Wubin Qian; Xiaodong Fang; Zhongbin Shi; Yingrui Li; Shengting Li; Gao Shan; Karsten Kristiansen; Songgang Li; Huanming Yang; Jian Wang; Jun Wang
Journal:  Genome Res       Date:  2009-12-17       Impact factor: 9.043

6.  Tunicamycins, streptovirudins, and corynetoxins, a special subclass of nucleoside antibiotics.

Authors:  K Eckardt
Journal:  J Nat Prod       Date:  1983 Jul-Aug       Impact factor: 4.050

7.  The clavulanic acid biosynthetic cluster of Streptomyces clavuligerus: genetic organization of the region upstream of the car gene.

Authors:  Encarnación Mellado; Luis Miguel Lorenzana; Marta Rodríguez-Sáiz; Bruno Díez; Paloma Liras; José Luis Barredo
Journal:  Microbiology       Date:  2002-05       Impact factor: 2.777

8.  Characterization of the biosynthesis gene cluster for the pyrrole polyether antibiotic calcimycin (A23187) in Streptomyces chartreusis NRRL 3882.

Authors:  Qiulin Wu; Jingdan Liang; Shuangjun Lin; Xiufen Zhou; Linquan Bai; Zixin Deng; Zhijun Wang
Journal:  Antimicrob Agents Chemother       Date:  2010-12-20       Impact factor: 5.191

9.  Biosynthesis of the antitumor agent chartreusin involves the oxidative rearrangement of an anthracyclic polyketide.

Authors:  Zhongli Xu; Kathrin Jakobi; Katrin Welzel; Christian Hertweck
Journal:  Chem Biol       Date:  2005-05

10.  Prodigal: prokaryotic gene recognition and translation initiation site identification.

Authors:  Doug Hyatt; Gwo-Liang Chen; Philip F Locascio; Miriam L Land; Frank W Larimer; Loren J Hauser
Journal:  BMC Bioinformatics       Date:  2010-03-08       Impact factor: 3.169
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  14 in total

1.  Selective catalytic hydrogenation of the N-acyl and uridyl double bonds in the tunicamycin family of protein N-glycosylation inhibitors.

Authors:  Neil Pj Price; Michael A Jackson; Karl E Vermillion; Judith A Blackburn; Jiakun Li; Biao Yu
Journal:  J Antibiot (Tokyo)       Date:  2017-11-01       Impact factor: 2.649

2.  The secreted metabolome of Streptomyces chartreusis and implications for bacterial chemistry.

Authors:  Christoph H R Senges; Arwa Al-Dilaimi; Douglas H Marchbank; Daniel Wibberg; Anika Winkler; Brad Haltli; Minou Nowrousian; Jörn Kalinowski; Russell G Kerr; Julia E Bandow
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-20       Impact factor: 11.205

3.  Discovery of the antibiotic phosacetamycin via a new mass spectrometry-based method for phosphonic acid detection.

Authors:  Bradley S Evans; Changming Zhao; Jiangtao Gao; Courtney M Evans; Kou-San Ju; James R Doroghazi; Wilfred A van der Donk; Neil L Kelleher; William W Metcalf
Journal:  ACS Chem Biol       Date:  2013-03-13       Impact factor: 5.100

4.  Discovery of phosphonic acid natural products by mining the genomes of 10,000 actinomycetes.

Authors:  Kou-San Ju; Jiangtao Gao; James R Doroghazi; Kwo-Kwang A Wang; Christopher J Thibodeaux; Steven Li; Emily Metzger; John Fudala; Joleen Su; Jun Kai Zhang; Jaeheon Lee; Joel P Cioni; Bradley S Evans; Ryuichi Hirota; David P Labeda; Wilfred A van der Donk; William W Metcalf
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-31       Impact factor: 11.205

5.  Quinovosamycins: new tunicamycin-type antibiotics in which the α, β-1″,11'-linked N-acetylglucosamine residue is replaced by N-acetylquinovosamine.

Authors:  Neil Pj Price; David P Labeda; Todd A Naumann; Karl E Vermillion; Michael J Bowman; Mark A Berhow; William W Metcalf; Kenneth M Bischoff
Journal:  J Antibiot (Tokyo)       Date:  2016-05-18       Impact factor: 2.649

6.  Strain-specific proteogenomics accelerates the discovery of natural products via their biosynthetic pathways.

Authors:  Jessica C Albright; Anthony W Goering; James R Doroghazi; William W Metcalf; Neil L Kelleher
Journal:  J Ind Microbiol Biotechnol       Date:  2013-11-19       Impact factor: 3.346

Review 7.  Identification and characterization of enzymes involved in the biosynthesis of pyrimidine nucleoside antibiotics.

Authors:  M McErlean; X Liu; Z Cui; B Gust; S G Van Lanen
Journal:  Nat Prod Rep       Date:  2021-07-21       Impact factor: 15.111

8.  Phylogenetic relatedness determined between antibiotic resistance and 16S rRNA genes in actinobacteria.

Authors:  Marketa Sagova-Mareckova; Dana Ulanova; Petra Sanderova; Marek Omelka; Zdenek Kamenik; Jana Olsovska; Jan Kopecky
Journal:  BMC Microbiol       Date:  2015-04-01       Impact factor: 3.605

9.  DoBISCUIT: a database of secondary metabolite biosynthetic gene clusters.

Authors:  Natsuko Ichikawa; Machi Sasagawa; Mika Yamamoto; Hisayuki Komaki; Yumi Yoshida; Shuji Yamazaki; Nobuyuki Fujita
Journal:  Nucleic Acids Res       Date:  2012-11-26       Impact factor: 16.971

10.  Structures of DPAGT1 Explain Glycosylation Disease Mechanisms and Advance TB Antibiotic Design.

Authors:  Yin Yao Dong; Hua Wang; Ashley C W Pike; Stephen A Cochrane; Sadra Hamedzadeh; Filip J Wyszyński; Simon R Bushell; Sylvain F Royer; David A Widdick; Andaleeb Sajid; Helena I Boshoff; Yumi Park; Ricardo Lucas; Wei-Min Liu; Seung Seo Lee; Takuya Machida; Leanne Minall; Shahid Mehmood; Katsiaryna Belaya; Wei-Wei Liu; Amy Chu; Leela Shrestha; Shubhashish M M Mukhopadhyay; Claire Strain-Damerell; Rod Chalk; Nicola A Burgess-Brown; Mervyn J Bibb; Clifton E Barry Iii; Carol V Robinson; David Beeson; Benjamin G Davis; Elisabeth P Carpenter
Journal:  Cell       Date:  2018-11-01       Impact factor: 41.582
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